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https://github.com/galaxyproject/galaxy.git
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John Chilton
ff6b9d61fb
Two sources for bio.tools data: - Configurable directory from Github (https://github.com/bio-tools/content/). - API requests to bio.tools web service (cachable). Code is structured into a stand-alone package decouple from Galaxy for dealing with bio.tools data and APIs and then an adapt to Galaxy's config.
38 lines
1.2 KiB
Python
38 lines
1.2 KiB
Python
import os
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from galaxy_test.base.populators import (
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DatasetPopulator,
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)
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from galaxy_test.driver import integration_util
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SCRIPT_DIRECTORY = os.path.abspath(os.path.dirname(__file__))
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MOCK_BIOTOOLS_CONTENT = os.path.join(SCRIPT_DIRECTORY, "mock_biotools_content")
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class DynamicEdamLoadingIntegrationTestCase(integration_util.IntegrationTestCase):
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"""Test mapping over tools with extended metadata enabled."""
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framework_tool_and_types = True
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@classmethod
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def handle_galaxy_config_kwds(cls, config):
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config["biotools_content_directory"] = MOCK_BIOTOOLS_CONTENT
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config["biotools_use_api"] = False
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def setUp(self):
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super().setUp()
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self.dataset_populator = DatasetPopulator(self.galaxy_interactor)
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def test_edam_properties(self):
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result = self._get("tools/bibtex")
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result.raise_for_status()
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result_json = result.json()
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assert "edam_operations" in result_json
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assert "edam_topics" in result_json
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edam_operations = result_json["edam_operations"]
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edam_topics = result_json["edam_topics"]
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assert len(edam_operations) == 4
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assert "operation_3198" in edam_operations
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assert len(edam_topics) == 1
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assert "topic_0102" in edam_topics
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