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49 lines
1.7 KiB
XML
49 lines
1.7 KiB
XML
<tool id="generate_matrix_for_pca_and_lda1" name="Generate A Matrix">
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<description>for using PC and LDA</description>
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<command interpreter="perl">generate_matrix_for_pca_lda.pl $input_1 $input_2 $output</command>
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<inputs>
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<param format="tabular" name="input_1" type="data" label="Source file First: a matrix (samples/observations in rows and variables/features in columns)"> </param>
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<param format="tabular" name="input_2" type="data" label="Source file Second: a table (samples/observations with response/class label)"> </param>
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</inputs>
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<outputs>
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<data format="tabular" name="output" />
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</outputs>
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<tests>
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<test>
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<param name="input_1" value="matrix_generator_for_pc_and_lda_input_1.tabular"/>
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<param name="input_2" value="matrix_generator_for_pc_and_lda_input_2.tabular"/>
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<output name="output" file="matrix_generator_for_pc_and_lda_output.tabular"/>
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</test>
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</tests>
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<help>
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.. class:: infomark
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**What it does**
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This tool consists of a module to generate a matrix to be used for running the Linear Discriminant Analysis as described in Carrel et al., 2006 (PMID: 17009873)
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*Carrel L, Park C, Tyekucheva S, Dunn J, Chiaromonte F, et al. (2006) Genomic Environment Predicts Expression Patterns on the Human Inactive X Chromosome. PLoS Genet 2(9): e151. doi:10.1371/journal.pgen.0020151*
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-----
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**Example**
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- Input file (Source file First)
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.. image:: ${static_path}/images/tools/lda/first_matrix_generator_example_file.png
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- Input file (Source file Second)
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.. image:: ${static_path}/images/tools/lda/second_matrix_generator_example_file.png
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</help>
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</tool>
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