Kelly Vincent 64553e62fa Removed errant right parenthesis from BFAST wrapper command

2011-01-14 00:23:15 -05:00

..

bfast_wrapper.py

Added version info to stdout for NGS tools

2010-11-24 12:35:49 -05:00

bfast_wrapper.xml

Removed errant right parenthesis from BFAST wrapper command

2011-01-14 00:23:15 -05:00

bowtie_color_wrapper.xml

Corrected output labels to be in line with other tools for NGS tools: sam_to_bam, sam_merge, sam_pileup, bam_to_sam, PerM, bowtie_color_wrapper, bowtie_wrapper, bwa_wrapper, lastz_paired_reads_wrapper, lastz_wrapper, srma_wrapper

2011-01-12 13:31:04 -05:00

bowtie_wrapper.py

Added --max and --un file output options to Bowtie and modified tests to test for them.

2010-12-01 10:54:35 -05:00

bowtie_wrapper.xml

Corrected output labels to be in line with other tools for NGS tools: sam_to_bam, sam_merge, sam_pileup, bam_to_sam, PerM, bowtie_color_wrapper, bowtie_wrapper, bwa_wrapper, lastz_paired_reads_wrapper, lastz_wrapper, srma_wrapper

2011-01-12 13:31:04 -05:00

bwa_color_wrapper.xml

Added paired-end reads functional tests for BWA color-space and base-space wrappers

2011-01-13 14:33:04 -05:00

bwa_wrapper.py

Added BWA color space wrapper; fixed names of FASTQ test files to indicate data type

2011-01-12 12:13:54 -05:00

bwa_wrapper.xml

Added paired-end reads functional tests for BWA color-space and base-space wrappers

2011-01-13 14:33:04 -05:00

fastq_statistics.xml

fix some typos for tools in folders N-Z

2009-09-25 02:06:03 -04:00

lastz_paired_reads_wrapper.py

Added version info to stdout for NGS tools

2010-11-24 12:35:49 -05:00

lastz_paired_reads_wrapper.xml

Corrected output labels to be in line with other tools for NGS tools: sam_to_bam, sam_merge, sam_pileup, bam_to_sam, PerM, bowtie_color_wrapper, bowtie_wrapper, bwa_wrapper, lastz_paired_reads_wrapper, lastz_wrapper, srma_wrapper

2011-01-12 13:31:04 -05:00

lastz_wrapper.py

Added version info to stdout for NGS tools

2010-11-24 12:35:49 -05:00

lastz_wrapper.xml

Corrected output labels to be in line with other tools for NGS tools: sam_to_bam, sam_merge, sam_pileup, bam_to_sam, PerM, bowtie_color_wrapper, bowtie_wrapper, bwa_wrapper, lastz_paired_reads_wrapper, lastz_wrapper, srma_wrapper

2011-01-12 13:31:04 -05:00

PerM.xml

Corrected output labels to be in line with other tools for NGS tools: sam_to_bam, sam_merge, sam_pileup, bam_to_sam, PerM, bowtie_color_wrapper, bowtie_wrapper, bwa_wrapper, lastz_paired_reads_wrapper, lastz_wrapper, srma_wrapper

2011-01-12 13:31:04 -05:00

srma_wrapper.py

Converted several tools to data table style of loc file handling (Bowtie, BWA, Lastz, Megablast, PerM, SRMA). Cleaned up several tool XML files, removing unnecessary None parameters.

2010-11-08 00:10:13 -05:00

srma_wrapper.xml

Corrected output labels to be in line with other tools for NGS tools: sam_to_bam, sam_merge, sam_pileup, bam_to_sam, PerM, bowtie_color_wrapper, bowtie_wrapper, bwa_wrapper, lastz_paired_reads_wrapper, lastz_wrapper, srma_wrapper

2011-01-12 13:31:04 -05:00