Jeremy Goecks 22bf6b8327 Enable Cuffcompare to take an arbitrary number of input GTFs. However, the wrapper does not currently keep track of all outputs tmap and refmap files because Galaxy cannot generate output files corresponding to each input.

2011-01-28 16:28:12 -05:00

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cuffcompare_wrapper.py

Enable Cuffcompare to take an arbitrary number of input GTFs. However, the wrapper does not currently keep track of all outputs tmap and refmap files because Galaxy cannot generate output files corresponding to each input.

2011-01-28 16:28:12 -05:00

cuffcompare_wrapper.xml

Enable Cuffcompare to take an arbitrary number of input GTFs. However, the wrapper does not currently keep track of all outputs tmap and refmap files because Galaxy cannot generate output files corresponding to each input.

2011-01-28 16:28:12 -05:00

cuffdiff_wrapper.py

Merge in Rory Kirshner's changes to cufflinks and cuffdiff. These changes add normalization support to cufflinks and cuffdiff and replicate support for cuffdiff.

2011-01-21 13:30:13 -05:00

cuffdiff_wrapper.xml

Merge in Rory Kirshner's changes to cufflinks and cuffdiff. These changes add normalization support to cufflinks and cuffdiff and replicate support for cuffdiff.

2011-01-21 13:30:13 -05:00

cufflinks_wrapper.py

Merge in Rory Kirshner's changes to cufflinks and cuffdiff. These changes add normalization support to cufflinks and cuffdiff and replicate support for cuffdiff.

2011-01-21 13:30:13 -05:00

cufflinks_wrapper.xml

Merge in Rory Kirshner's changes to cufflinks and cuffdiff. These changes add normalization support to cufflinks and cuffdiff and replicate support for cuffdiff.

2011-01-21 13:30:13 -05:00

filter_transcripts_via_tracking.py

Add 'filter transcripts via tracking' tool to RNA-seq tools. This tool is useful for operating on output files from cufftools suite.

2010-05-10 12:42:05 -04:00

filter_transcripts_via_tracking.xml

Add 'filter transcripts via tracking' tool to RNA-seq tools. This tool is useful for operating on output files from cufftools suite.

2010-05-10 12:42:05 -04:00

tophat_wrapper.py

Make Tophat wrapper compatible with python 2.4 by removing try-catch-finally.

2010-12-03 14:00:35 -05:00

tophat_wrapper.xml

Add validator to Tophat's segment mismatches parameter.

2011-01-21 09:22:49 -05:00