mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-08-31 01:02:04 +08:00
Nicola Soranzo
125 lines
4.1 KiB
Python
125 lines
4.1 KiB
Python
import logging
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from galaxy.tool_util.verify.interactor import (
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GalaxyInteractorApi,
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verify_tool,
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)
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from galaxy.tools import DataManagerTool
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from galaxy_test.base.env import (
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setup_keep_outdir,
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target_url_parts,
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)
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from galaxy_test.driver.testcase import DrivenFunctionalTestCase
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log = logging.getLogger(__name__)
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toolbox = None
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# Do not test Data Managers as part of the standard Tool Test Framework.
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TOOL_TYPES_NO_TEST = (DataManagerTool,)
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class ToolTestCase(DrivenFunctionalTestCase):
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"""Abstract test case that runs tests based on a `galaxy.tools.test.ToolTest`."""
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def do_it(self, tool_id=None, tool_version=None, test_index=0, resource_parameters=None):
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"""
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Run through a tool test case.
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"""
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resource_parameters = resource_parameters or {}
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if tool_id is None:
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tool_id = self.tool_id
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assert tool_id
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verify_tool(
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tool_id,
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self.galaxy_interactor,
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resource_parameters=resource_parameters,
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test_index=test_index,
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tool_version=tool_version,
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)
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def build_tests(
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app=None,
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testing_shed_tools=False,
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master_api_key=None,
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user_api_key=None,
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name_prefix="TestForTool_",
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baseclass=ToolTestCase,
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create_admin=False,
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user_email=None,
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G=None,
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contains=None,
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):
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"""
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If the module level variable `toolbox` is set, generate `ToolTestCase`
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classes for all of its tests and put them into this modules globals() so
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they can be discovered by nose.
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"""
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# galaxy_interactor = None
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# if app is None:
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host, port, url = target_url_parts()
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keep_outputs_dir = setup_keep_outdir()
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galaxy_interactor_kwds = {
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"galaxy_url": url,
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"master_api_key": master_api_key,
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"api_key": user_api_key,
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"keep_outputs_dir": keep_outputs_dir,
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"user_api_key_is_admin_key": True,
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}
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if create_admin and not user_api_key:
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galaxy_interactor_kwds["test_user"] = user_email
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galaxy_interactor = GalaxyInteractorApi(**galaxy_interactor_kwds)
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if not G:
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# Push all the toolbox tests to module level
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G = globals()
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# Eliminate all previous tests from G.
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for key in G.copy().keys():
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if key.startswith("TestForTool_"):
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del G[key]
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def make_test_method(tool_version, test_index, test_function_name):
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def test_tool(self):
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self.do_it(tool_version=tool_version, test_index=test_index)
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test_tool.__name__ = test_function_name
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return test_tool
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tests_summary = galaxy_interactor.get_tests_summary()
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for tool_id, tool_summary in tests_summary.items():
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# Create a new subclass of ToolTestCase, dynamically adding methods
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# named test_tool_XXX that run each test defined in the tool config.
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if contains and contains not in tool_id:
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continue
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name = name_prefix + tool_id.replace(" ", "_")
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baseclasses = (baseclass,)
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namespace = {}
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all_versions_test_count = 0
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for tool_version, version_summary in tool_summary.items():
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count = version_summary["count"]
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for i in range(count):
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test_function_name = f"test_tool_{all_versions_test_count:06d}"
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test_method = make_test_method(tool_version, i, test_function_name)
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test_method.__doc__ = f"( {tool_id} ) > Test-{all_versions_test_count + 1}"
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namespace[test_function_name] = test_method
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namespace["tool_id"] = tool_id
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namespace["galaxy_interactor"] = galaxy_interactor
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namespace["master_api_key"] = master_api_key
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namespace["user_api_key"] = user_api_key or galaxy_interactor.api_key
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namespace["test_count"] = count
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all_versions_test_count += 1
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# Create new class object, with name name, derived
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# from baseclasses (which should be a tuple of classes) and with namespace dict.
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new_class_obj = type(str(name), baseclasses, namespace)
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G[name] = new_class_obj
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return G
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