galaxy

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Eric Rasche 23b4ddc947 Notebook signatures must be unique

Rather than assigning a static notebook signature, this has been replaced with a randomly,
deterministically generated notebook signature. This is currently done off of the dataset's id,
encoded through trans (so it's the unique hash, and not just the number), however this will need to
be exchanged for history_id whenever we have access to that.

2014-10-18 18:38:01 -04:00

charts

ToolForm: Parses dynamic options and rerun states to tool model

2014-10-14 17:57:01 -04:00

circster/config

Vis registry: add two tests (has_attribute, not_eq); add see also for test types in visualization.dtd; correct applicability tests for trackster and circster using not_eq on datatype.track_type

2014-08-28 09:44:56 -04:00

common/templates

Charts to_json_string/dumps swap.

2014-09-08 17:11:18 -04:00

graphview

Plugin framework: factor out page serving responsibility, add HookPluginManager subclass and PageServingPluginManager subclass; Visualization registry: inherit from PageServingPluginManager

2013-09-18 10:53:12 -04:00

ipython

Notebook signatures must be unique

2014-10-18 18:38:01 -04:00

phyloviz/config

Visualization framework: remove deprecated 'template_root' element left from when visualizations were loaded from galaxy's template directory

2014-04-23 11:59:21 -04:00

scatterplot

Charts to_json_string/dumps swap.

2014-09-08 17:11:18 -04:00

sweepster/config

Visualization framework: remove deprecated 'template_root' element left from when visualizations were loaded from galaxy's template directory

2014-04-23 11:59:21 -04:00

trackster/config

Vis registry: add two tests (has_attribute, not_eq); add see also for test types in visualization.dtd; correct applicability tests for trackster and circster using not_eq on datatype.track_type

2014-08-28 09:44:56 -04:00

additional_template_paths.xml

PageServingPluginManager: allow additional common paths to be added to each plugin's TemplateLookup and allow configuration of these paths; Visualizations Framework: add common/templates, readme, and configuration of same

2014-02-05 11:55:13 -05:00

README.txt

Rename universe_wsgi.ini -> galaxy.ini everywhere.

2014-09-15 16:43:51 -04:00

visualization.dtd

Vis registry: add two tests (has_attribute, not_eq); add see also for test types in visualization.dtd; correct applicability tests for trackster and circster using not_eq on datatype.track_type

2014-08-28 09:44:56 -04:00

README.txt

Custom visualization plugins
----------------------------

Visualizations can be added to your Galaxy instance by creating
sub-directories, templates, and static files here.

Properly configured and written visualizations will be accessible to
the user when they click the 'visualizations' icon for a dataset
in their history panel.

The framework must be enabled in your 'galaxy.ini' file by uncommenting (and
having a valid path for) the 'visualizations_plugin_directory' entry.

For more information, see http://wiki.galaxyproject.org/VisualizationsRegistry


Sub-directory structure
-----------------------

In general, sub-directories should follow the pattern:

    my_visualization/
        config/
            my_visualization.xml
        static/
            ... any static files the visualization needs (if any)
        templates/
            ... any Mako templates the visualization needs

The XML config file for a visualization plugin can be validated on the command
line using (from your plugin directory):

    xmllint my_visualization/config/my_visualization.xml --valid --noout