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26 lines
937 B
Python
26 lines
937 B
Python
import os
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import pkg_resources; pkg_resources.require( "bx-python" )
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from bx.align import maf
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from galaxy import datatypes, config, jobs
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from shutil import move
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def exec_after_process(app, inp_data, out_data, param_dict, tool, stdout, stderr):
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output_data = out_data.items()[0][1]
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new_stdout = ""
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split_stdout = stdout.split("\n")
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for line in split_stdout:
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if line.startswith("#FILE1"):
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fields = line.split("\t")
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dbkey = fields[1]
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output_data.dbkey = dbkey
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output_data.name = "%s (%s)" % ( output_data.name, dbkey )
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app.model.context.add( output_data )
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app.model.context.flush()
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else:
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new_stdout = "%s\n%s" % ( new_stdout, line )
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for data in output_data.creating_job.output_datasets:
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data = data.dataset
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data.info = new_stdout
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app.model.context.add( data )
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app.model.context.flush()
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