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30 lines
1.3 KiB
XML
30 lines
1.3 KiB
XML
<tool id="metadata" name="metadata" version="1.0.0">
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<command>mkdir $output_copy_of_input.extra_files_path; cp $input.extra_files_path/* $output_copy_of_input.extra_files_path; echo "$input.metadata.base_name" > $output_of_input_metadata</command>
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<inputs>
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<param name="input" type="data" format="velvet" label="Velvet Dataset" help="Prepared by velveth."/>
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</inputs>
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<outputs>
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<data format="txt" name="output_of_input_metadata" />
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<data format="velvet" name="output_copy_of_input" />
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</outputs>
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<tests>
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<test>
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<param name="input" value="velveth_test1/output.html" ftype="velvet" >
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<composite_data value='velveth_test1/Sequences' ftype="Sequences"/>
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<composite_data value='velveth_test1/Roadmaps' ftype="Roadmaps"/>
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<composite_data value='velveth_test1/Log'/>
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<metadata name="base_name" value="Example Metadata" />
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</param>
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<!-- This ouptut tests setting input metadata above -->
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<output name="output_of_input_metadata" ftype="txt">
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<assert_contents>
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<has_line line="Example Metadata" />
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</assert_contents>
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</output>
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<!-- This output tests an assertion about output metadata -->
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<output name="output_copy_of_input" file="velveth_test1/output.html">
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<metadata name="base_name" value="velvet" />
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</output>
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</test>
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</tests></tool>
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