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138 lines
3.3 KiB
Python
138 lines
3.3 KiB
Python
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from .test_workflows import BaseWorkflowsApiTestCase
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class WorkflowsFromYamlApiTestCase( BaseWorkflowsApiTestCase ):
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def setUp( self ):
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super( WorkflowsFromYamlApiTestCase, self ).setUp()
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def test_simple_upload(self):
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workflow_id = self._upload_yaml_workflow("""
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- type: input
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- tool_id: cat1
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state:
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input1:
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$link: 0
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- tool_id: cat1
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state:
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input1:
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$link: 1#out_file1
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- tool_id: random_lines1
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state:
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num_lines: 10
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input:
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$link: 2#out_file1
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seed_source:
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seed_source_selector: set_seed
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seed: asdf
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__current_case__: 1
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""")
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self._get("workflows/%s/download" % workflow_id).content
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# FIXME: This test fails on some machines due to (we're guessing) yaml loading
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# order being not guaranteed and inconsistent across platforms. The workflow
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# yaml loader probably needs to enforce order using something like the
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# approach described here:
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# https://stackoverflow.com/questions/13297744/pyyaml-control-ordering-of-items-called-by-yaml-load
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# def test_multiple_input( self ):
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# history_id = self.dataset_populator.new_history()
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# self._run_jobs("""
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# steps:
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# - type: input
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# label: input1
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# - type: input
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# label: input2
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# - tool_id: cat_list
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# state:
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# input1:
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# - $link: input1
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# - $link: input2
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# test_data:
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# input1: "hello world"
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# input2: "123"
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# """, history_id=history_id)
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# contents1 = self.dataset_populator.get_history_dataset_content(history_id)
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# assert contents1 == "hello world\n123\n"
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def test_simple_output_actions( self ):
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history_id = self.dataset_populator.new_history()
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self._run_jobs("""
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steps:
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- type: input
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label: input1
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- tool_id: cat1
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label: first_cat
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state:
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input1:
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$link: 0
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outputs:
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out_file1:
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hide: true
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rename: "the new value"
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- tool_id: cat1
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state:
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input1:
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$link: first_cat#out_file1
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test_data:
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input1: "hello world"
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""", history_id=history_id)
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details1 = self.dataset_populator.get_history_dataset_details(history_id, hid=2)
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assert not details1["visible"]
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assert details1["name"] == "the new value", details1
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details2 = self.dataset_populator.get_history_dataset_details(history_id, hid=3)
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assert details2["visible"]
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def test_pause( self ):
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workflow_id = self._upload_yaml_workflow("""
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- label: test_input
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type: input
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- label: first_cat
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tool_id: cat1
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state:
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input1:
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$link: test_input
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- label: the_pause
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type: pause
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connect:
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input:
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- first_cat#out_file1
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- label: second_cat
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tool_id: cat1
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state:
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input1:
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$link: the_pause
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""")
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print self._get("workflows/%s/download" % workflow_id).json()
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def test_implicit_connections( self ):
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workflow_id = self._upload_yaml_workflow("""
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- label: test_input
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type: input
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- label: first_cat
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tool_id: cat1
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state:
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input1:
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$link: test_input
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- label: the_pause
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type: pause
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connect:
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input:
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- first_cat#out_file1
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- label: second_cat
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tool_id: cat1
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state:
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input1:
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$link: the_pause
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- label: third_cat
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tool_id: cat1
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connect:
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$step: second_cat
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state:
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input1:
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$link: test_input
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""")
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workflow = self._get("workflows/%s/download" % workflow_id).json()
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print workflow
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