mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-09-24 16:30:27 +08:00
John Chilton
a357e2b613
- Add script to hit the API with workflows requests. - Update testing Dockerfile to allow just booting up with a fixed master API key for this test to leverage. - WIP: on updating test Dockerfile to work with slurm, multiple handlers, uwsgi, etc...
67 lines
1.6 KiB
Python
67 lines
1.6 KiB
Python
from __future__ import print_function
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import os
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import sys
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script_dir = os.path.dirname(__file__)
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galaxy_root = os.path.join(script_dir, os.path.pardir)
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new_path = [ os.path.join( galaxy_root, "lib" ) ]
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new_path.extend( sys.path[1:] )
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sys.path = new_path
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try:
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from argparse import ArgumentParser
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except ImportError:
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ArgumentParser = None
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import re
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try:
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from galaxy import eggs
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eggs.require("numpy")
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except ImportError:
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pass
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import numpy
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DESCRIPTION = ""
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TIMING_LINE_PATTERN = re.compile("\((\d+.\d+) ms\)")
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def main(argv=None):
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if ArgumentParser is None:
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raise Exception("Test requires Python 2.7")
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arg_parser = ArgumentParser(description=DESCRIPTION)
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arg_parser.add_argument("--file", default="paster.log")
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arg_parser.add_argument("--print_lines", default=False, action="store_true")
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arg_parser.add_argument("--pattern")
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args = arg_parser.parse_args(argv)
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print_lines = args.print_lines
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filter_pattern = re.compile(args.pattern)
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times = []
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for line in open(args.file, "r"):
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if not filter_pattern.search(line):
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continue
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match = TIMING_LINE_PATTERN.search(line)
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if not match:
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continue
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times.append(float(match.group(1)))
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if print_lines:
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print(line.strip())
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template = "Summary (ms) - Mean: %f, Median: %f, Max: %f, Min: %f, StdDev: %f"
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message = template % (
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numpy.mean(times),
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numpy.median(times),
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numpy.max(times),
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numpy.min(times),
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numpy.std(times)
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)
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print(message)
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if __name__ == "__main__":
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main()
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