peterjc aafd2d0a51 Add sorting option to Count1 (tools/filters/uniq.xml) ...

When using this tool to produce a tally table, often want to
have the most common entries listed first - rather than the
sort order coming from the values being counted.

2015-03-13 16:43:02 -04:00

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gff

Make tool version explicit (Job runner would assume 1.0.0)

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axt_to_concat_fasta.py

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axt_to_concat_fasta.xml

Make tool version explicit (Job runner would assume 1.0.0)

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axt_to_fasta.py

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axt_to_fasta.xml

Make tool version explicit (Job runner would assume 1.0.0)

2015-03-09 15:21:48 +00:00

axt_to_lav_code.py

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axt_to_lav.py

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axt_to_lav.xml

Make tool version explicit (Job runner would assume 1.0.0)

2015-03-09 15:21:48 +00:00

bed2gff.xml

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bed_to_bigbed.xml

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bed_to_gff_converter.py

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catWrapper.py

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catWrapper.xml

Make tool version explicit (Job runner would assume 1.0.0)

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changeCase.pl

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changeCase.xml

Make tool version explicit (Job runner would assume 1.0.0)

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commWrapper.pl

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commWrapper.xml

Make tool version explicit (Job runner would assume 1.0.0)

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compare.xml

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condense_characters.pl

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condense_characters.xml

Make tool version explicit (Job runner would assume 1.0.0)

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convert_characters.pl

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convert_characters.py

Make stripping and condensing optional.

2014-10-28 16:57:49 +01:00

convert_characters.xml

Make tool version explicit (Job runner would assume 1.0.0)

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CreateInterval.pl

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CreateInterval.xml

Make tool version explicit (Job runner would assume 1.0.0)

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cutWrapper.pl

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cutWrapper.xml

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fileGrep.xml

Make tool version explicit (Job runner would assume 1.0.0)

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fixedValueColumn.pl

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fixedValueColumn.xml

Make tool version explicit (Job runner would assume 1.0.0)

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gff2bed.xml

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gff_to_bed_converter.py

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grep.py

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grep.xml

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gtf2bedgraph.xml

Make tool version explicit (Job runner would assume 1.0.0)

2015-03-09 15:21:48 +00:00

gtf_to_bedgraph_converter.py

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headWrapper.pl

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headWrapper.xml

Make tool version explicit (Job runner would assume 1.0.0)

2015-03-09 15:21:48 +00:00

join.py

Remove dependency on simplejson; convert everything over to using the json module in the python standard library.

2014-01-10 07:29:05 -05:00

joiner2.xml

Make tool version explicit (Job runner would assume 1.0.0)

2015-03-09 15:21:48 +00:00

joiner.xml

Remove dependency on simplejson; convert everything over to using the json module in the python standard library.

2014-01-10 07:29:05 -05:00

joinWrapper.pl

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joinWrapper.py

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lav_to_bed_code.py

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lav_to_bed.py

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lav_to_bed.xml

Make tool version explicit (Job runner would assume 1.0.0)

2015-03-09 15:21:48 +00:00

mergeCols.py

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mergeCols.xml

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pasteWrapper.pl

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pasteWrapper.xml

Make tool version explicit (Job runner would assume 1.0.0)

2015-03-09 15:21:48 +00:00

random_lines_two_pass.py

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randomlines.py

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randomlines.xml

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remove_beginning.pl

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remove_beginning.xml

Make tool version explicit (Job runner would assume 1.0.0)

2015-03-09 15:21:48 +00:00

secure_hash_message_digest.py

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secure_hash_message_digest.xml

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sff_extract.py

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sff_extractor.xml

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sorter.py

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sorter.xml

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tailWrapper.pl

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tailWrapper.xml

Make tool version explicit (Job runner would assume 1.0.0)

2015-03-09 15:21:48 +00:00

trimmer.py

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trimmer.xml

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ucsc_gene_bed_to_exon_bed.py

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ucsc_gene_bed_to_exon_bed.xml

Make tool version explicit (Job runner would assume 1.0.0)

2015-03-09 15:21:48 +00:00

ucsc_gene_bed_to_intron_bed.py

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ucsc_gene_bed_to_intron_bed.xml

Make tool version explicit (Job runner would assume 1.0.0)

2015-03-09 15:21:48 +00:00

ucsc_gene_table_to_intervals.py

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ucsc_gene_table_to_intervals.xml

Make tool version explicit (Job runner would assume 1.0.0)

2015-03-09 15:21:48 +00:00

uniq.py

Add sorting option to Count1 (tools/filters/uniq.xml)

2015-03-13 16:43:02 -04:00

uniq.xml

Add sorting option to Count1 (tools/filters/uniq.xml)

2015-03-13 16:43:02 -04:00

wc_gnu.xml

Make tool version explicit (Job runner would assume 1.0.0)

2015-03-09 15:21:48 +00:00

wig_to_bigwig.xml

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wiggle_to_simple.py

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wiggle_to_simple.xml

Make tool version explicit (Job runner would assume 1.0.0)

2015-03-09 15:21:48 +00:00