mirror of
https://github.com/galaxyproject/galaxy.git
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79 lines
2.8 KiB
YAML
79 lines
2.8 KiB
YAML
name: Converter tests
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on:
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push:
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paths-ignore:
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- 'client/**'
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- 'doc/**'
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pull_request:
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paths-ignore:
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- 'client/**'
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- 'doc/**'
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env:
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GALAXY_TEST_RAISE_EXCEPTION_ON_HISTORYLESS_HDA: '1'
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concurrency:
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group: converter-${{ github.ref }}
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cancel-in-progress: true
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jobs:
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test:
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name: Test
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runs-on: ubuntu-latest
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strategy:
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matrix:
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python-version: ['3.7']
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steps:
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- uses: actions/checkout@v2
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with:
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path: 'galaxy root'
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- name: Clone galaxyproject/galaxy-test-data
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uses: actions/checkout@v2
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with:
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repository: galaxyproject/galaxy-test-data
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path: galaxy-test-data
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- uses: actions/setup-python@v1
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with:
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python-version: ${{ matrix.python-version }}
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- name: Cache venv dir
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uses: actions/cache@v1
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id: pip-cache
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with:
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path: ~/.cache/pip
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key: pip-cache-${{ matrix.python-version }}-${{ hashFiles('galaxy root/requirements.txt') }}
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- name: Move test data
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run: rsync -av --remove-source-files --exclude .git galaxy-test-data/ 'galaxy root/test-data/'
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- name: Install planemo
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run: pip install planemo
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- name: Install jq
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run: sudo apt-get install jq
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- name: Determine converters to check
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run: |
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ls 'galaxy root'/lib/galaxy/datatypes/converters/*xml | grep -v -f 'galaxy root'/lib/galaxy/datatypes/converters/.tt_skip > tool_list.txt
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echo "Skipping checks for the following converters:"
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ls 'galaxy root'/lib/galaxy/datatypes/converters/*xml | grep -f 'galaxy root'/lib/galaxy/datatypes/converters/.tt_skip
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echo "Checking only the following converters:"
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cat tool_list.txt
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- name: Lint converters
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run: |
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mapfile -t TOOL_ARRAY < tool_list.txt
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for CONVERTER in "${TOOL_ARRAY[@]}"; do
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planemo lint --skip citations,stdio,help --report_level warn "$CONVERTER"
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done
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- name: Run tests
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run: |
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mkdir -p json_output
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mapfile -t TOOL_ARRAY < tool_list.txt
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for CONVERTER in "${TOOL_ARRAY[@]}"; do
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json=$(mktemp -u -p json_output --suff .json)
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planemo test --test_output_json "$json" --galaxy_python_version ${{ matrix.python-version }} --galaxy_root 'galaxy root' "$CONVERTER" || true
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done
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planemo merge_test_reports json_output/*.json tool_test_output.json
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planemo test_reports tool_test_output.json --test_output tool_test_output.html
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if jq '.["tests"][]["data"]["status"]' tool_test_output.json | grep -v "success"; then
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echo "Unsuccessful tests found, inspect the 'Converter test results' artifact for details."
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exit 1
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fi
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- uses: actions/upload-artifact@v2
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if: failure()
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with:
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name: Converter test results (${{ matrix.python-version }})
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path: tool_test_output.html
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