Files
galaxy/tools/filters/headWrapper.pl
T

20 lines
449 B
Perl

#! /usr/bin/perl -w
use strict;
use warnings;
# a wrapper for head for use in galaxy
# headWrapper.pl [filename] [# lines to show] [output]
die "Check arguments" unless @ARGV == 3;
die "Line number must be an integer\n" unless $ARGV[1]=~ m/^\d+$/;
open (OUT, ">$ARGV[2]") or die "Cannot create $ARGV[2]:$!\n";
open (HEAD, "head -n $ARGV[1] $ARGV[0]|") or die "Cannot run head:$!\n";
while (<HEAD>) {
print OUT;
}
close OUT;
close HEAD;