Files
galaxy/scripts/api/workflow_import_from_file_rpark.py
T

40 lines
925 B
Python

#!/usr/bin/env python
"""
python rpark_import_workflow_from_file.py 35a24ae2643785ff3d046c98ea362c7f http://localhost:8080/api/workflows/import 'spp_submodule.ga'
python rpark_import_workflow_from_file.py 35a24ae2643785ff3d046c98ea362c7f http://localhost:8080/api/workflows/import 'spp_submodule.ga'
"""
import os, sys
sys.path.insert( 0, os.path.dirname( __file__ ) )
from common import submit
### Rpark edit ###
import json
def openWorkflow(in_file):
with open(in_file) as f:
temp_data = json.load(f)
return temp_data;
try:
assert sys.argv[2]
except IndexError:
print 'usage: %s key url [name] ' % os.path.basename( sys.argv[0] )
sys.exit( 1 )
try:
#data = {}
#data[ 'name' ] = sys.argv[3]
data = {};
workflow_dict = openWorkflow(sys.argv[3]);
data ['workflow'] = workflow_dict;
except IndexError:
pass
submit( sys.argv[1], sys.argv[2], data )