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64 lines
1.7 KiB
Plaintext
64 lines
1.7 KiB
Plaintext
#
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# Galaxy has traditionally managed all of its own dependencies (in the form of
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# precompiled Python eggs) for a few reasons:
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#
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# 1. We can ensure that Galaxy works with the versions of the dependencies that
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# we require.
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# 2. We can precompile them for numerous platforms, meaning that developers or
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# system administrators attempting to use Galaxy do not need to wait while
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# dependencies compile/install, nor do they need to have compilers or
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# various development libraries installed on their system.
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#
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# However, you may want to manage these dependencies on your own. If so, this
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# file can be used with pip to install all of the bare minimum dependencies for
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# starting a Galaxy server. Use this in conjunction with the
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# `GALAXY_ENABLE_EGGS=False` environment variable.
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#
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# Note that except in the case of Whoosh, all dependencies will be installed at
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# their newest versions. Galaxy has not been tested with these and you may
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# (likely?) run into problems! The Galaxy Team does not support using Galaxy
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# with dependency versions other than those in eggs.ini, however, if you do
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# find an incompatibility between Galaxy and the latest version, we would
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# appreciate if you would investigate and provide a code fix for the issue. We
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# are trying to move away from our strict version dependency policy and this
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# would greatly help in our efforts.
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Paste
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PasteDeploy
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docutils
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wchartype
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pexpect
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amqp
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repoze.lru
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Routes
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WebOb
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SQLAlchemy
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Cheetah
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pycrypto
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MarkupSafe
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WebHelpers
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anyjson
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kombu
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numpy
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bx-python # bx must be installed after numpy!
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pysam
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Mako
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PyYAML
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mercurial
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pytz
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Babel
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decorator
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Tempita
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sqlalchemy-migrate
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Beaker
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Whoosh<2.5
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paramiko
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ssh
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Fabric
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boto
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simplejson
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bioblend
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Parsley
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WebError
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http://svgfig.googlecode.com/files/svgfig-1.1.6.tgz
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