Files
galaxy/display_applications/igb/bedgraph.xml
T
2015-06-16 22:34:09 -05:00

16 lines
847 B
XML

<display id="igb_bedgraph" version="1.0.0" name="display in IGB">
<link id="View" name="View">
<url>$bioviz</url>
<param type="data" name="bedgraph_file_for_name" viewable="False"/>
<param type="template" name="niceName" viewable="False" strip="True">
#import re
#set nm=$bedgraph_file_for_name.name
${re.sub('\W',"_",nm)}
</param>
<param type="data" name="bedgraph_file" url="${niceName}.bed.bedgraph" />
<param type="template" name="bioviz" strip="True" >
http://bioviz.org/igb/galaxy.html?version=${bedgraph_file.dbkey}&amp;loadresidues=false&amp;feature_url_0=${bedgraph_file.url}&amp;sym_name_0=${niceName}&amp;sym_method_0=${bedgraph_file.url}&amp;query_url=${bedgraph_file.url}&amp;server_url=galaxy
</param>
</link>
</display>