mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-09-24 16:30:27 +08:00
James Taylor
84b2cb4f74
TODO: This should just be able to read an INI file, far too many variables at this point.
121 lines
4.1 KiB
Python
121 lines
4.1 KiB
Python
import atexit, logging, os, sys, tempfile
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import pkg_resources
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pkg_resources.require( "twill==0.8.3" )
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pkg_resources.require( "Paste" )
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pkg_resources.require( "PasteDeploy" )
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pkg_resources.require( "Cheetah" )
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import twill, unittest, time
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import os, os.path, subprocess, sys, threading
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import galaxy.web.server
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import galaxy.app
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from galaxy.app import UniverseApplication
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log = logging.getLogger( __name__ )
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# TODO: should be able to override these, as well as prevent starting th
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# server (for running the tests against a running instance)
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default_galaxy_test_host = "localhost"
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default_galaxy_test_port = "9999"
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galaxy_test_file_dir = "test-data"
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server = None
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app = None
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def setup():
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"""Start the web server for the tests"""
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global server, app
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galaxy_test_host = os.environ.get( 'GALAXY_TEST_HOST', default_galaxy_test_host )
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galaxy_test_port = os.environ.get( 'GALAXY_TEST_PORT', default_galaxy_test_port )
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start_server = 'GALAXY_TEST_EXTERNAL' not in os.environ
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if start_server:
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if 'GALAXY_TEST_DBPATH' in os.environ:
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db_path = os.environ['GALAXY_TEST_DBPATH']
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else:
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tempdir = tempfile.mkdtemp()
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db_path = os.path.join( tempdir, 'database' )
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file_path = os.path.join( db_path, 'files' )
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try:
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os.makedirs( file_path )
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except OSError:
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pass
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if 'GALAXY_TEST_DBURI' in os.environ:
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database_connection = os.environ['GALAXY_TEST_DBURI']
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else:
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database_connection = 'sqlite:///' + os.path.join( db_path, 'universe.sqlite' )
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app = UniverseApplication( job_queue_workers = 5,
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use_pbs = ( 'GALAXY_TEST_USE_PBS' in os.environ ),
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template_path = "templates",
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database_connection = database_connection,
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file_path = file_path,
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tool_config_file = "tool_conf.xml.sample",
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tool_path = "tools",
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test_conf = "test.conf",
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log_destination = "stdout",
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use_heartbeat=False )
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log.info( "Embedded Universe application started" )
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webapp = galaxy.app.app_factory( dict(),
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use_translogger = False,
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app=app )
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server = galaxy.web.server.serve( webapp, dict(),
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host=galaxy_test_host,
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port=galaxy_test_port,
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start_loop=False )
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atexit.register( teardown )
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import threading
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t = threading.Thread( target=server.serve_forever )
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t.start()
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time.sleep( 2 )
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log.info( "Embedded web server started" )
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if app:
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# TODO: provisions for loading toolbox from file when using external server
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import test_toolbox
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test_toolbox.toolbox = app.toolbox
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else:
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from galaxy import tools
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import test_toolbox
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test_toolbox.toolbox = tools.ToolBox( 'tool_conf.xml', 'tools' )
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# Test if the server is up
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import httplib
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conn = httplib.HTTPConnection( galaxy_test_host, galaxy_test_port )
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conn.request( "GET", "/" )
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assert conn.getresponse().status == 200, "Test HTTP server did not return '200 OK'"
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os.environ['GALAXY_TEST_HOST'] = galaxy_test_host
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os.environ['GALAXY_TEST_PORT'] = galaxy_test_port
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os.environ['GALAXY_TEST_FILE_DIR'] = galaxy_test_file_dir
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def teardown():
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global server, app
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if server:
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server.shutdown()
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server = None
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log.info( "Embedded web server stopped" )
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if app:
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app.shutdown()
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app = None
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log.info( "Embedded Universe application stopped" )
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time.sleep(2)
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# def test_toolbox():
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# for test in app.toolbox.get_tests():
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# yield ( test, )
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