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30 lines
1.2 KiB
Plaintext
30 lines
1.2 KiB
Plaintext
#This is a sample file distributed with Galaxy that enables tools
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#to use a directory of Bowtie indexed sequences data files. You will need
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#to create these data files and then create a bowtie_indices.loc file
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#similar to this one (store it in this directory) that points to
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#the directories in which those files are stored. The bowtie_indices.loc
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#file has this format (white space characters are TAB characters):
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#
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#<build> <file_base>
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#
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#So, for example, if you had hg18 indexed stored in
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#/depot/data2/galaxy/bowtie/hg18/,
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#then the bowtie_indices.loc entry would look like this:
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#
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#hg18 /depot/data2/galaxy/bowtie/hg18/hg18
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#
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#and your /depot/data2/galaxy/bowtie/hg18/ directory
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#would contain hg18.*.ebwt files:
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#
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#-rw-r--r-- 1 james universe 830134 2005-09-13 10:12 hg18.1.ebwt
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#-rw-r--r-- 1 james universe 527388 2005-09-13 10:12 hg18.2.ebwt
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#-rw-r--r-- 1 james universe 269808 2005-09-13 10:12 gh18.3.ebwt
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#...etc...
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#
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#Your bowtie_indices.loc file should include an entry per line for
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#each index set you have stored. The "file" in the path does not actually
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#exist, but it is the prefix for the actual index files. For example:
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#
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#hg18 /depot/data2/galaxy/bowtie/hg18/hg18
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#hg19 /depot/data2/galaxy/bowtie/hg19/hg19
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