galaxy

mirror of https://github.com/galaxyproject/galaxy.git synced 2026-09-24 16:30:27 +08:00

Files

T

John Chilton a357e2b613 Workflow scaling test infrastructure.

- Add script to hit the API with workflows requests.
 - Update testing Dockerfile to allow just booting up with a fixed master API key for this test to leverage.
 - WIP: on updating test Dockerfile to work with slurm, multiple handlers, uwsgi, etc...

2015-03-25 14:54:48 -04:00

for_workflows

Workflow scaling test infrastructure.

2015-03-25 14:54:48 -04:00

bibtex.xml

Add github citation example.

2015-03-16 11:14:01 -04:00

catDocker.xml

Allow tools and deployers to specify optional Docker-based dependency resolution.

2014-06-07 01:45:05 -05:00

code_file.py

Add code_file example tool from Bjoern.

2014-12-15 14:37:22 -05:00

code_file.xml

Add code_file example tool from Bjoern.

2014-12-15 14:37:22 -05:00

collection_creates_list_2.xml

More configurable format and metadata handling for output collections.

2015-01-15 09:30:00 -05:00

collection_creates_list.xml

More configurable format and metadata handling for output collections.

2015-01-15 09:30:00 -05:00

collection_creates_pair_from_type.xml

A simpler way to configure output pairs (exploiting static structure).

2015-01-15 09:30:00 -05:00

collection_creates_pair.xml

More configurable format and metadata handling for output collections.

2015-01-15 09:30:00 -05:00

collection_mixed_param.xml

Small tweaks to some functional test tools.

2014-09-03 08:43:25 -04:00

collection_nested_test.xml

Bugfix: More left/right -> forward/reverse fixes.

2014-05-27 12:52:41 -05:00

collection_optional_param.xml

Implement optional collection params.

2014-07-25 10:28:50 -05:00

collection_paired_test.xml

Small tweaks to some functional test tools.

2014-09-03 08:43:25 -04:00

collection_split_on_column.xml

Allow tools to output collections with a dynamic number of datasets.

2015-01-15 09:30:00 -05:00

collection_two_paired.xml

Allow using data collection steps via workflow API.

2014-07-28 19:18:40 -04:00

column_multi_param.xml

Fix data column parameters pointed at multiple data parameters.

2014-09-26 10:49:43 -04:00

column_param.xml

Fix data column parameters pointed at multiple data parameters.

2014-09-26 10:49:43 -04:00

compare_bam_as_sam.xml

Add broken bam test... Nate will fix metadata and I can continue working on it.

2015-03-06 13:17:33 -05:00

composite_output.xml

Add more sample tools for tool testing framework.

2013-11-21 19:17:12 -06:00

composite.xml

Test tool fixes.

2015-03-15 09:53:05 -04:00

data_manager.xml

Allow specification of multiple data manager configuration files...

2014-12-15 00:20:35 -05:00

disambiguate_cond.xml

Improve examples of newer tool functional test features.

2014-02-03 10:11:31 -06:00

disambiguate_repeats.xml

Improve examples of newer tool functional test features.

2014-02-03 10:11:31 -06:00

gzipped_inputs.xml

Fix gz/zip upload of files to test framework.

2014-12-17 09:38:49 -05:00

identifier_multiple.xml

Expose improved sample tracking to tools for implicit map/reduce ops.

2015-02-02 16:29:42 -05:00

identifier_single.xml

Expose improved sample tracking to tools for implicit map/reduce ops.

2015-02-02 16:29:42 -05:00

implicit_default_conds.xml

Fixes related to implicit defaults of param values.

2013-11-21 23:37:22 -06:00

job_properties.xml

Fix apparent typo for tool failure testing

2015-03-11 11:24:14 +00:00

metadata.xml

Check ftype attribute (if defined) on test output datasets.

2014-03-14 10:12:41 -05:00

min_repeat.xml

Fix API handling of tools containing repeat statement with min set.

2013-11-21 20:18:47 -06:00

multi_data_param.xml

Small tweaks demo/test tool multi_data_param.xml.

2015-03-12 14:28:54 -04:00

multi_output_assign_primary.xml

Implement tool test demonstrating pull request 569.

2014-11-25 22:13:17 -05:00

multi_output_configured.xml

More discovered dataset testing tweaks.

2014-09-05 15:19:18 -04:00

multi_output.xml

Allow tools to test runtime discovered datasets.

2014-03-29 17:11:17 -05:00

multi_page.xml

Fix multi-page tool help parsing.

2014-08-12 08:19:04 -04:00

multi_repeats.xml

Clean up tool framework test tools.

2013-11-21 21:17:04 -06:00

multi_select.xml

Merge next-stable.

2014-12-05 20:36:48 -05:00

multiple_versions_v01.xml

Allow multiple tools with the same id in ToolBox.

2014-12-31 18:21:10 -05:00

multiple_versions_v02.xml

Allow multiple tools with the same id in ToolBox.

2014-12-31 18:21:10 -05:00

output_filter.xml

Add functional test tool demonstrating output filters.

2014-09-03 08:43:25 -04:00

output_format.xml

Refactoring: Start abstracting XML processing out of Tool and param classes.

2014-12-11 00:26:13 -05:00

output_order.xml

Allow outputs in tool functional tests to be specified in any order when using API interactor.

2013-11-21 19:17:13 -06:00

parallelism_optional.xml

Add tool functional test for parallelism with optional inputs.

2014-03-16 20:41:42 -05:00

parallelism.xml

Add example tool with task splitting to tool functional framework tests.

2014-01-28 14:34:26 -06:00

README.txt

Rename universe_wsgi.ini -> galaxy.ini everywhere.

2014-09-15 16:43:51 -04:00

sample_data_manager_conf.xml

Allow specification of multiple data manager configuration files...

2014-12-15 00:20:35 -05:00

sample_datatypes_conf.xml

Add broken bam test... Nate will fix metadata and I can continue working on it.

2015-03-06 13:17:33 -05:00

samples_tool_conf.xml

Workflow scaling test infrastructure.

2015-03-25 14:54:48 -04:00

simple_constructs.xml

Add more sample tools for tool testing framework.

2013-11-21 19:17:12 -06:00

simple_constructs.yml

Refactoring: Start abstracting XML processing out of Tool and param classes.

2014-12-11 00:26:13 -05:00

special_params.xml

Add functional test tool demonstrating special parameters.

2014-09-03 08:43:25 -04:00

tool_directory.xml

Expose $__tool_directory__ to tools.

2015-02-03 10:29:34 -05:00

top_level_data.xml

Test tool fixes.

2015-03-15 09:53:05 -04:00

upload.py

Add new option, tools, and data to functional test framework to test/demonstrate tool framework itself.

2013-11-21 19:17:12 -06:00

upload.xml

Add new option, tools, and data to functional test framework to test/demonstrate tool framework itself.

2013-11-21 19:17:12 -06:00

validation_default.xml

Synchronize validation of workflows between web and API controllers.

2014-09-10 11:51:10 -04:00

validation_repeat.xml

More tool functional tests for validation stuff.

2014-09-16 21:29:10 -04:00

validation_sanitizer.xml

More tool functional tests for validation stuff.

2014-09-16 21:29:10 -04:00

README.txt

This directory contains tools only useful for testing and
demonstrating aspects of the tool syntax. Run the test driver script
'run_tests.sh' with the '-framework' as first argument to run through
these tests. Pass in an '-id' along with one of these tool ids to test
a single tool.

Some API tests use these tools to test various features of the API,
tool, and workflow subsystems. Pass the arugment
'-with_framework_test_tools' to 'run_tests.sh' in addition to '-api'
to ensure these tools get loaded during the testing process.

Finally, to play around witht these tools interactively - simply
replace the 'galaxy.ini' option 'tool_config_file' with:

tool_config_file = test/functional/tools/samples_tool_conf.xml