Greg Von Kuster 1a239e9c67 Add the ability to edit library templates and make library template inheritance optional.  Fix another bug in the form builder's CheckboxField.is_checked() method, and clean up some library code. With regard to template inheritance, a LibraryFolder is a special case because if it inherited the template from it's parent, we want to set inheritable to True for it's info_association.  This allows for the default inheritance to be False for each level in the Library hierarchy unless we're creating a new level in the hierarchy, in which case we'll inherit the "inheritable" setting from the parent level.

2010-02-11 14:26:25 -05:00

..

__init__.py

New functional test harness. Update to recent nose. No longer rely on nose to manage the embedded web server (this is not done in functional_tests.py). Log page contents to a temporary file on check_page_for_string error.

2009-10-20 13:08:29 -04:00

test_DNAse_flanked_genes.py

Fix most of the db flushes to be compatibel with sqlalchemy 05. Add the _monkeypatch_query_method() back into assignmapper due to a single object.get() method in the MetadataCollection class since Metadata has no current hook into mapping.context ( the sqlalchemy session ). There a 4 flushes in metadata,py and 20 flushes in model.__init__.py that still use the _monkeypatch_session_method in assignmapper due to the same issue, but all other flushes are fixed.

2009-11-11 15:59:41 -05:00

test_forms_and_requests.py

Sequencer data acquisition for LIMS

2010-02-04 11:01:45 -05:00

test_get_data.py

Fix for uploading a Bam file that has not yet been sorted, the call to samtools sort has been moved from the sam_to_bam tool to the Bam()set_meta() method to ensure all Bam datasets are sorted prior to indexing. Added new functional tests to cover uploaing unsorted Bam files. Also cleaned up code in the upload tool for uploaing various binary data formats.

2009-12-07 16:04:33 -05:00

test_history_functions.py

Unified sharing model for histories, workflows, and pages; these items can now be private, shared with a set of users, accessible via link for viewing and importing, or published. Specific features added are: (1) added published flag to histories and workflows, added importable flag to pages; (2) added unified sharing interface for setting sharing options; (3) updated grid framework to use new sharing model; (4) updated functional tests to reflect new sharing model; (5) added legacy support for making pretty URLs for items already made importable. Also, new sharing model does not yet allow sharing of multiple items at once, so functional test for this feature has been commented out. Fixes #229; Fixes #182.

2010-01-20 12:26:13 -05:00

test_metadata_editing.py

Fix most of the db flushes to be compatibel with sqlalchemy 05. Add the _monkeypatch_query_method() back into assignmapper due to a single object.get() method in the MetadataCollection class since Metadata has no current hook into mapping.context ( the sqlalchemy session ). There a 4 flushes in metadata,py and 20 flushes in model.__init__.py that still use the _monkeypatch_session_method in assignmapper due to the same issue, but all other flushes are fixed.

2009-11-11 15:59:41 -05:00

test_security_and_libraries.py

Add the ability to edit library templates and make library template inheritance optional.  Fix another bug in the form builder's CheckboxField.is_checked() method, and clean up some library code. With regard to template inheritance, a LibraryFolder is a special case because if it inherited the template from it's parent, we want to set inheritable to True for it's info_association.  This allows for the default inheritance to be False for each level in the Library hierarchy unless we're creating a new level in the hierarchy, in which case we'll inherit the "inheritable" setting from the parent level.

2010-02-11 14:26:25 -05:00

test_toolbox.py

Fix for the general functional test tool failures.

2010-01-22 13:51:56 -05:00

test_user_info.py

Adding grids to forms, requests & request types pages. Resolves issue #231.

2009-11-17 14:28:34 -05:00