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39 lines
1.6 KiB
Plaintext
39 lines
1.6 KiB
Plaintext
#This is a sample file distributed with Galaxy that is used to define a
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#list of nucleotide BLAST databases, using three columns tab separated
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#(longer whitespace are TAB characters):
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#
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#<unique_id> <database_caption> <base_name_path>
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#
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#The captions typically contain spaces and might end with the build date.
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#It is important that the actual database name does not have a space in it,
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#and that the first tab that appears in the line is right before the path.
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#
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#So, for example, if your database is nt and the path to your base name
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#is /depot/data2/galaxy/blastdb/nt/nt.chunk, then the blastdb.loc entry
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#would look like this:
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#
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#nt_02_Dec_2009 nt 02 Dec 2009 /depot/data2/galaxy/blastdb/nt/nt.chunk
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#
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#and your /depot/data2/galaxy/blastdb/nt directory would contain all of
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#your "base names" (e.g.):
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#
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#-rw-r--r-- 1 wychung galaxy 23437408 2008-04-09 11:26 nt.chunk.00.nhr
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#-rw-r--r-- 1 wychung galaxy 3689920 2008-04-09 11:26 nt.chunk.00.nin
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#-rw-r--r-- 1 wychung galaxy 251215198 2008-04-09 11:26 nt.chunk.00.nsq
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#...etc...
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#
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#Your blastdb.loc file should include an entry per line for each "base name"
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#you have stored. For example:
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#
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#nt_02_Dec_2009 nt 02 Dec 2009 /depot/data2/galaxy/blastdb/nt/nt.chunk
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#wgs_30_Nov_2009 wgs 30 Nov 2009 /depot/data2/galaxy/blastdb/wgs/wgs.chunk
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#test_20_Sep_2008 test 20 Sep 2008 /depot/data2/galaxy/blastdb/test/test
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#...etc...
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#
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#See also blastdb_p.loc which is for any protein BLAST database.
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#
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#Note that for backwards compatibility with workflows, the unique ID of
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#an entry must be the path that was in the original loc file, because that
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#is the value stored in the workflow for that parameter.
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#
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