mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-09-21 13:50:20 +08:00
Nicola Soranzo
7866f2dcfd
Also add the following combination: GALAXY_RUN_ALL=1 ./run.sh --daemon --wait which, by preventing servers from starting simultaneously, is useful when multiple servers are configured before creating the database, or when updating to a new Galaxy release containing a database upgrade.
82 lines
2.8 KiB
Bash
Executable File
82 lines
2.8 KiB
Bash
Executable File
#!/bin/sh
|
|
|
|
cd `dirname $0`
|
|
|
|
# If there is a .venv/ directory, assume it contains a virtualenv that we
|
|
# should run this instance in.
|
|
if [ -d .venv ];
|
|
then
|
|
printf "Activating virtualenv at %s/.venv\n" $(pwd)
|
|
. .venv/bin/activate
|
|
fi
|
|
|
|
# If there is a file that defines a shell environment specific to this
|
|
# instance of Galaxy, source the file.
|
|
if [ -z "$GALAXY_LOCAL_ENV_FILE" ];
|
|
then
|
|
GALAXY_LOCAL_ENV_FILE='./config/local_env.sh'
|
|
fi
|
|
|
|
if [ -f $GALAXY_LOCAL_ENV_FILE ];
|
|
then
|
|
. $GALAXY_LOCAL_ENV_FILE
|
|
fi
|
|
|
|
python ./scripts/check_python.py
|
|
[ $? -ne 0 ] && exit 1
|
|
|
|
./scripts/common_startup.sh
|
|
|
|
if [ -n "$GALAXY_UNIVERSE_CONFIG_DIR" ]; then
|
|
python ./scripts/build_universe_config.py "$GALAXY_UNIVERSE_CONFIG_DIR"
|
|
fi
|
|
|
|
if [ -z "$GALAXY_CONFIG_FILE" ]; then
|
|
if [ -f universe_wsgi.ini ]; then
|
|
GALAXY_CONFIG_FILE=universe_wsgi.ini
|
|
elif [ -f config/galaxy.ini ]; then
|
|
GALAXY_CONFIG_FILE=config/galaxy.ini
|
|
else
|
|
GALAXY_CONFIG_FILE=config/galaxy.ini.sample
|
|
fi
|
|
export GALAXY_CONFIG_FILE
|
|
fi
|
|
|
|
if [ -n "$GALAXY_RUN_ALL" ]; then
|
|
servers=`sed -n 's/^\[server:\(.*\)\]/\1/ p' $GALAXY_CONFIG_FILE | xargs echo`
|
|
echo "$@" | grep -q 'daemon\|restart'
|
|
if [ $? -ne 0 ]; then
|
|
echo 'ERROR: $GALAXY_RUN_ALL cannot be used without the `--daemon`, `--stop-daemon` or `restart` arguments to run.sh'
|
|
exit 1
|
|
fi
|
|
(echo "$@" | grep -q -e '--daemon\|restart') && (echo "$@" | grep -q -e '--wait')
|
|
WAIT=$?
|
|
ARGS=`echo "$@" | sed 's/--wait//'`
|
|
for server in $servers; do
|
|
if [ $WAIT -eq 0 ]; then
|
|
python ./scripts/paster.py serve $GALAXY_CONFIG_FILE --server-name=$server --pid-file=$server.pid --log-file=$server.log $ARGS
|
|
while true; do
|
|
sleep 1
|
|
printf "."
|
|
# Grab the current pid from the pid file
|
|
if ! current_pid_in_file=$(cat $server.pid); then
|
|
echo "A Galaxy process died, interrupting" >&2
|
|
exit 1
|
|
fi
|
|
# Search for all pids in the logs and tail for the last one
|
|
latest_pid=`egrep '^Starting server in PID [0-9]+\.$' $server.log -o | sed 's/Starting server in PID //g;s/\.$//g' | tail -n 1`
|
|
# If they're equivalent, then the current pid file agrees with our logs
|
|
# and we've succesfully started
|
|
[ -n "$latest_pid" ] && [ $latest_pid -eq $current_pid_in_file ] && break
|
|
done
|
|
echo
|
|
else
|
|
echo "Handling $server with log file $server.log..."
|
|
python ./scripts/paster.py serve $GALAXY_CONFIG_FILE --server-name=$server --pid-file=$server.pid --log-file=$server.log $@
|
|
fi
|
|
done
|
|
else
|
|
# Handle only 1 server, whose name can be specified with --server-name parameter (defaults to "main")
|
|
python ./scripts/paster.py serve $GALAXY_CONFIG_FILE $@
|
|
fi
|