John Davis 16e18d404e Merge pull request #19395 from mvdbeek/alternative_format_source_fix ...

Alternative `format_source` fix

2025-01-23 10:54:03 -05:00

..

biotools

Move things around

2022-11-16 17:01:28 +01:00

data

Replace deprecated `__package__ with __name__

2024-12-16 15:16:41 +00:00

mulled

Merge branch 'release_24.0' into release_24.1

2024-12-19 15:18:45 +00:00

tool_directories/r-tool-dir

Systematic handling of remotely required tool files.

2021-08-10 14:04:32 -04:00

toolbox

Enable `warn_unused_ignores` mypy option

2024-04-16 01:12:58 +01:00

upgrade

Integrate tool test validation into upgrade advisor.

2024-08-24 16:12:32 -04:00

verify

Merge branch 'release_24.1' into dev

2024-10-16 11:26:07 +01:00

__init__.py

…

framework_tool_checks.yml

Tool Request models.

2024-09-30 13:25:02 -04:00

parameter_specification.yml

Pydantic models for parameter validators.

2024-10-22 07:49:37 -04:00

test_assertion_models.py

Modeling from assertions.

2024-09-13 16:23:10 -04:00

test_conda_resolution.py

Restore resolution of Conda environments generated from non-lowercase package names

2023-07-27 13:23:32 +01:00

test_container_description.py

container description: make identifier non-optional

2023-06-14 15:28:37 +01:00

test_container_resolution.py

tests: add integration and fix unit tests

2023-06-14 15:28:36 +01:00

test_cwl_util.py

Move unit tests to more appropriate packages.

2020-07-14 09:24:42 -04:00

test_cwl.py

Fix `parse_requirements_and_containers()` for CWL and YAML tools

2022-06-22 03:25:56 +01:00

test_docker_volumes.py

Drop containers package, move to tool_util

2022-03-24 19:51:59 +01:00

test_edam_util.py

Apply black formatting.

2022-02-03 07:42:20 -05:00

test_loader_directory.py

Test improvements

2023-01-30 10:38:29 +01:00

test_ontologies.py

Allow multiple xrefs in biotools_mappings.tsv.

2024-10-02 00:10:44 -04:00

test_output_checker.py

fix test exit code default

2024-03-01 22:45:39 -05:00

test_output_models.py

Fix #18554.

2024-08-05 09:43:15 -04:00

test_parameter_convert.py

Fix param models for dynamic options and truevalue/falsevalue

2024-10-22 07:49:37 -04:00

test_parameter_specification.py

Make conditional discriminators literals instead of generic string/bool

2025-01-03 16:17:49 +02:00

test_parameter_test_cases.py

Tool Request models.

2024-09-30 13:25:02 -04:00

test_parameter_validator_models.py

Pydantic models for parameter validators.

2024-10-22 07:49:37 -04:00

test_parsing.py

Fix type annotation resulting from annotating HDCA.collection

2025-01-10 23:37:10 +02:00

test_required_files.py

Replace `unittest.TestCase` with pytest-based partial re-implementation

2022-09-27 03:34:58 +01:00

test_resolution_cache.py

Merge branch 'release_22.01' into release_22.05

2022-08-30 20:32:39 +02:00

test_singularity_util.py

containers: do not mount /tmp/

2023-06-14 15:28:38 +01:00

test_test_definition_parsing.py

Fix planemo timeout handling

2025-01-08 13:16:50 +02:00

test_test_format_model.py

Models for YAML test format.

2024-09-24 12:47:07 -04:00

test_test_parsing.py

use asserts also in test

2024-03-09 15:10:52 +01:00

test_tool_deps.py

Fix new UP031 errors from ruff 0.4.2

2024-04-29 00:09:38 +01:00

test_tool_linters.py

Merge branch 'release_24.2' into dev

2025-01-13 16:10:31 +00:00

test_tool_loader.py

Merge branch 'release_22.01' into dev

2022-02-21 17:00:55 +00:00

test_toolbox_view_parsing.py

Apply black formatting.

2022-02-03 07:42:20 -05:00

test_toolbox_view_sources.py

Apply black formatting.

2022-02-03 07:42:20 -05:00

test_util.py

Apply black formatting.

2022-02-03 07:42:20 -05:00

test_verify_function.py

Initial unit test for copying test data.

2022-09-23 09:11:40 -04:00

test_verify_hid.py

Initial unit test for copying test data.

2022-09-23 09:11:40 -04:00

test_verify_script.py

Remove use of mktemp

2023-06-12 09:48:38 -04:00

test_verify.py

Add pin_labels attribute for image_diff comparison method

2024-03-29 12:01:34 +01:00

test_version.py

Vendorise `packaging.versions.LegacyVersion`

2023-05-07 17:30:59 +01:00

test_wait.py

Apply black formatting.

2022-02-03 07:42:20 -05:00

util.py

Tool Request models.

2024-09-30 13:25:02 -04:00