mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-10-24 02:04:04 +08:00
Nicola Soranzo
162fe28318
Fix mulled unit test test/unit/tool_util/mulled/test_mulled_build.py::test_mulled_build_files_cli[True] :
```
use_mamba = True
tmpdir = local('/tmp/pytest-of-runner/pytest-0/test_mulled_build_files_cli_Tr0')
@pytest.mark.parametrize("use_mamba", [False, True])
@external_dependency_management
def test_mulled_build_files_cli(use_mamba: bool, tmpdir) -> None:
singularity_image_dir = tmpdir.mkdir("singularity image dir")
target = build_target("zlib", version="1.2.13", build="h166bdaf_4")
involucro_context = InvolucroContext(involucro_bin=os.path.join(tmpdir, "involucro"))
exit_code = mull_targets(
[target],
involucro_context=involucro_context,
command="build-and-test",
singularity=True,
use_mamba=use_mamba,
singularity_image_dir=singularity_image_dir,
)
> assert exit_code == 0
E assert 1 == 0
...
[Jun 7 08:40:09] SERR error libmamba Expected environment not found at prefix: /usr/local
[Jun 7 08:40:09] SERR critical libmamba Aborting.
```
Upstream issue: https://github.com/mamba-org/mamba/issues/3845 .
Fixed upstream in https://github.com/mamba-org/mamba/pull/3919 ,
released in mamba 2.2.0 .
Also:
- Improve type annotations
- Replace `FALLBACK_LINE_TUPLE` namedtuple with `Target` dataclass