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galaxy/test/integration
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John Chilton 3773a56107 Fix short ids in tool panel views. 
Use new data structure to optimize get_tool(exact=False) as well - should speed up certain kinds of toolbox related operations.
2023-10-06 12:38:06 -04:00
..
chained_dyndest_rules
Apply black formatting.
2022-02-03 07:42:20 -05:00
cloudauthz
Format Python code with black 23.1.0
2023-02-01 23:51:03 +00:00
delay_rules
Integration test for job recovery (before and after handler has picked it up).
2018-08-21 15:17:12 -04:00
job_resource_rules
Add integration test for ignoring invalid resource request in tool state
2023-08-22 15:29:03 +02:00
mock_biotools_content/data
Parse edam operation and topic data from bio.tools if available.
2021-09-07 14:29:38 -04:00
objectstore
Rename object stores in config.
2023-05-04 16:06:45 -04:00
objectstore_selection_rules
Apply black formatting.
2022-02-03 07:42:20 -05:00
panel_views_1
Fix short ids in tool panel views.
2023-10-06 12:38:06 -04:00
resubmission_rules
Apply black formatting.
2022-02-03 07:42:20 -05:00
webdav
Pluggable URI handling across upload components.
2020-07-14 10:09:50 -04:00
__init__.py
…
chained_dyndest_job_conf.xml
Cleanup integration test configuration code.
2019-05-02 08:45:11 -04:00
conftest.py
Enable celery in API, Selenium, Integration tests
2022-05-25 19:46:47 +02:00
delay_job_conf.yml
Allow specifying useful classes of tools for mapping in job conf.
2021-07-14 13:46:56 -04:00
dockerized_job_conf.yml
Test that tmp_dir gets mounted correctly
2023-08-09 15:34:39 +02:00
dummy_job_resource_parameters.xml
Add integration test for ignoring invalid resource request in tool state
2023-08-22 15:29:03 +02:00
embedded_pulsar_docker_job_conf.yml
Drop more uWSGI legacy things
2022-03-15 21:32:00 +01:00
embedded_pulsar_job_conf.xml
Use remote_metadata: true when using extended metadata
2021-10-26 17:59:05 +02:00
embedded_pulsar_metadata_extended_job_conf.yml
Allow specifying useful classes of tools for mapping in job conf.
2021-07-14 13:46:56 -04:00
embedded_pulsar_metadata_job_conf.yml
Allow specifying useful classes of tools for mapping in job conf.
2021-07-14 13:46:56 -04:00
embedded_pulsar_singularity_job_conf.yml
Add `--no-mount tmp` for singularity destination in tests
2023-02-28 18:49:30 +00:00
fallback_container_resolver.yml
add test for loading a per destination container resolver config
2023-04-02 10:39:44 +02:00
file_sources_conf_remote_files.yml
Add url_regex matching for DRS filesources and add integration test
2023-06-14 19:27:31 +05:30
file_sources_conf_vault.yml
Add new secret type to user preferences that is not sent to client
2021-12-01 10:48:36 +05:30
file_sources_conf.yml
Restore original filename for file_source_conf_webdav.yml
2023-06-14 19:27:31 +05:30
handler_template_job_conf.xml
Integration tests for handler assignment methods
2019-01-04 16:46:29 -05:00
io_injection_job_conf.yml
Allow YAML configuration of job_conf.xml.
2019-05-07 08:23:30 -04:00
job_resource_error_recovery_job_conf.yml
Add integration test for ignoring invalid resource request in tool state
2023-08-22 15:29:03 +02:00
refgenie.yml
add more tests
2021-03-25 14:01:17 +01:00
resubmission_default_job_conf.yml
Allow specifying useful classes of tools for mapping in job conf.
2021-07-14 13:46:56 -04:00
resubmission_dynamic_job_conf.xml
Allow specifying useful classes of tools for mapping in job conf.
2021-07-14 13:46:56 -04:00
resubmission_job_conf.yml
Allow specifying useful classes of tools for mapping in job conf.
2021-07-14 13:46:56 -04:00
resubmission_job_resource_parameters_conf.xml
Allow YAML configuration of job_conf.xml.
2019-05-07 08:23:30 -04:00
resubmission_pulsar_job_conf.xml
Allow specifying useful classes of tools for mapping in job conf.
2021-07-14 13:46:56 -04:00
resubmission_runners.py
Apply black formatting.
2022-02-03 07:42:20 -05:00
resubmission_small_memory_job_conf.xml
Allow YAML configuration of job_conf.xml.
2019-05-07 08:23:30 -04:00
resubmission_small_memory_resubmission_to_large_job_conf.xml
Tool-centric annotation of out of memory errors.
2017-12-22 09:08:18 -05:00
resubmission_tool_detected_always_error_job_conf.xml
Fix resubmission on tool error detection.
2018-11-23 14:32:04 +01:00
resubmission_tool_detected_resubmit_job_conf.xml
Fix resubmission on tool error detection.
2018-11-23 14:32:04 +01:00
sets_tmp_dir_expression_job_conf.xml
Fix another integration test
2021-02-25 13:49:58 +01:00
sets_tmp_dir_to_true_job_conf.xml
Cleanup integration test configuration code.
2019-05-02 08:45:11 -04:00
simple_job_conf.xml
Fix failing integration test.
2019-05-03 08:38:33 -04:00
singularity_job_conf.yml
require_container in tests
2023-06-20 10:28:21 +02:00
test_apache_nginx_sendfile.py
Merge remote-tracking branch 'upstream/release_22.05' into dev
2022-11-16 12:07:04 +01:00
test_async_downloads.py
Replace `unittest.TestCase` in API, framework, performance, Selenium and ToolShed tests
2022-11-07 15:44:01 +00:00
test_celery_tasks.py
Ignore 2 type errors in tests
2022-11-29 14:59:17 -05:00
test_chained_dynamic_destinations.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_change_datatype_with_store_by_id.py
Rename class which is not derived from `TestCase`
2022-11-07 15:44:03 +00:00
test_cli_runners.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_coexecution.py
Fixes for Pulsar 0.15.0.
2023-02-09 09:51:27 -05:00
test_config_options_users.py
Fix Integeration typo
2022-11-23 01:20:00 +00:00
test_config_schema.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_configuration_decode.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_container_resolvers.py
Apply suggestions from code review
2023-06-20 10:30:19 +02:00
test_containerized_jobs.py
follow-up restucture integration tests
2023-06-14 15:32:18 +01:00
test_data_manager_refgenie.py
Even more typing
2022-11-28 04:50:00 +00:00
test_data_manager.py
Even more typing
2022-11-28 04:50:00 +00:00
test_datatype_upload.py
Fix test_objectstore_datatype_upload.py . More type annotations
2022-11-23 01:19:59 +00:00
test_default_permissions.py
Use `history_id` fixture instead of instance attribute. More type annotations
2022-11-23 04:04:51 +00:00
test_dynamic_edam_loading.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_edam_toolbox.py
Format Python code with black 23.1.0
2023-02-01 23:51:03 +00:00
test_extended_metadata_mapping.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_extended_metadata_outputs_to_working_directory.py
Fix and extend extended metadata outputs to working directory tests
2023-09-12 13:07:10 +02:00
test_extended_metadata.py
Fix and extend extended metadata outputs to working directory tests
2023-09-12 13:07:10 +02:00
test_fail_job_tool_unavailable.py
use history_id fixture instead of instance variable with the same name
2022-11-23 01:19:59 +00:00
test_fluent_metrics.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_flush_per_n_datasets.py
Use celery in more integration tests
2022-05-26 12:48:44 +02:00
test_galaxy_interactor.py
Format Python code with black 23.1.0
2023-02-01 23:51:03 +00:00
test_genomes.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_handler_assignment_methods.py
Format Python code with black 23.1.0
2023-02-01 23:51:03 +00:00
test_history_archiving.py
Increase test coverage + fixes
2023-06-19 09:44:17 +02:00
test_history_import_export.py
Refactor history archival testing related actions
2023-06-19 09:39:55 +02:00
test_interactivetools_api.py
Merge branch 'release_22.05' into dev
2023-01-03 13:13:53 -08:00
test_job_environments.py
Use `history_id` fixture instead of instance attribute. More type annotations
2022-11-23 04:04:51 +00:00
test_job_files.py
Wrap session.flush in test.integration
2023-06-09 13:05:26 -04:00
test_job_outputs_to_working_directory.py
Use celery in more integration tests
2022-05-26 12:48:44 +02:00
test_job_recovery.py
Even more typing
2022-11-28 04:50:00 +00:00
test_job_resource_error_recovery.py
Add integration test for ignoring invalid resource request in tool state
2023-08-22 15:29:03 +02:00
test_job_resubmission.py
Format Python code with black 23.1.0
2023-02-01 23:51:03 +00:00
test_kubernetes_runner.py
Format Python code with black 23.1.0
2023-02-01 23:51:03 +00:00
test_local_job_cancellation.py
Wrap session.flush in test.integration
2023-06-09 13:05:26 -04:00
test_materialize_dataset_instance_tasks.py
Fix test failures
2023-02-09 18:14:18 +05:30
test_max_discovered_files.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_metadata_strategy.py
Test case to demonstrate disk usage update for work dir outputs is broken with celery_extended.
2023-05-18 16:01:14 +02:00
test_model_store_scripts.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_notifications.py
remove notification favorite field from backend and update schema, migration and tests
2023-06-14 14:16:11 +02:00
test_page_revision_json_encoding.py
use history_id fixture instead of instance variable with the same name
2022-11-23 01:19:59 +00:00
test_panel_views.py
Format Python code with black 23.1.0
2023-02-01 23:51:03 +00:00
test_prefix_handling.py
Various fixes to path prefix handling
2023-05-05 16:38:17 +02:00
test_pulsar_embedded_containers.py
Use `history_id` fixture instead of instance attribute. More type annotations
2022-11-23 04:04:51 +00:00
test_pulsar_embedded_copy_working.py
test a tool with from_working_dir and pulsar
2019-12-13 22:58:32 +01:00
test_pulsar_embedded_extended_metadata.py
Fix tool stdio on pulsar and implement job stdio
2023-04-06 17:07:00 +02:00
test_pulsar_embedded_mq.py
Extend pulsar test cases with composite_output_tests
2023-08-24 10:44:40 +02:00
test_pulsar_embedded_remote_metadata.py
Fix tool stdio on pulsar and implement job stdio
2023-04-06 17:07:00 +02:00
test_pulsar_embedded.py
Extend pulsar test cases with composite_output_tests
2023-08-24 10:44:40 +02:00
test_purge_datasets.py
Attempt to fix typing issues in integration tests.
2023-05-24 13:20:21 -04:00
test_quota.py
Implement quota tracking options per ObjectStore.
2023-02-19 10:33:21 -05:00
test_recalculate_user_disk_usage.py
Extend test to reproduce disk usage recalculation wrongly dropping to 0 when no quota source is defined
2023-07-07 22:09:49 +10:00
test_remote_files_histories.py
Format Python code with black 23.1.0
2023-02-01 23:51:03 +00:00
test_remote_files_posix.py
Relax file source access requirements in tests
2022-12-08 13:33:08 +01:00
test_remote_files.py
Manually compute hash in test of drs fetch
2023-06-14 19:27:31 +05:30
test_repository_operations.py
Fix short ids in tool panel views.
2023-10-06 12:38:06 -04:00
test_resolvers.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_save_job_id_on_datasets.py
Apply black formatting.
2022-02-03 07:42:20 -05:00
test_scripts.py
Drop test for help display in deleted scripts
2023-02-08 00:39:42 -05:00
test_shed_tool_tests.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_storage_cleaner.py
Add missing API endpoints to deal with archived cleanup
2023-07-27 13:23:35 +02:00
test_structured_dataset.py
Attempt to fix typing issues in integration tests.
2023-05-24 13:20:21 -04:00
test_tool_data_bundles.py
Push extra files from object store cache to object store
2023-08-26 08:30:16 +02:00
test_tool_data_delete.py
Send reload message after data bundle import is complete
2023-09-03 18:24:28 +02:00
test_upload_configuration_options.py
Format Python code with black 23.1.0
2023-02-01 23:51:03 +00:00
test_user_preferences.py
Add integration test
2023-01-09 17:29:37 -05:00
test_vault_extra_prefs.py
Refactor integration tests to create utility for setting up a database vault.
2023-05-02 11:29:13 -04:00
test_vault_file_source.py
Refactor integration tests to create utility for setting up a database vault.
2023-05-02 11:29:13 -04:00
test_web_framework_config.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_webdav.py
Restore original filename for file_source_conf_webdav.yml
2023-06-14 19:27:31 +05:30
test_work_queue_put_failure.py
use history_id fixture instead of instance variable with the same name
2022-11-23 01:19:59 +00:00
test_workflow_handler_configuration.py
Format Python code with black 23.1.0
2023-02-01 23:51:03 +00:00
test_workflow_invocation.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_workflow_refactoring.py
Fix integration tests
2023-07-31 14:03:33 +02:00
test_workflow_scheduling_options.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_workflow_sync.py
Format Python code with black 23.1.0
2023-02-01 23:51:03 +00:00
test_workflow_tasks.py
Validate BioCompute Objects against schema in tests
2022-10-14 12:20:24 +02:00
user_preferences_extra_conf.yml
Change vault api test case to integration test case and add missing conditional requirements
2021-12-20 18:23:00 +05:30
workflow_handler_configuration_job_conf.xml
[17.01] Restrict workflow scheduling within a history to a fixed, random handler.
2017-03-29 22:20:41 -04:00