mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-09-21 13:50:20 +08:00
John Chilton
102566dd5e
- Implement kwalify schema to validate/define the schema. - Replace ini configuration with YAML (completely backward compatible). - Rebuild a sample configuration from the schema (config/reports.yml.sample).
54 lines
1.4 KiB
Bash
Executable File
54 lines
1.4 KiB
Bash
Executable File
#!/bin/sh
|
|
|
|
|
|
# Usage: ./run_reports.sh [--sync-config] <start|stop>
|
|
#
|
|
#
|
|
# Description: This script can be used to start or stop the galaxy
|
|
# reports web application. Passing in --sync-config as the first
|
|
# argument to this will cause Galaxy's database and path parameters
|
|
# from galaxy.ini to be copied over into reports.ini.
|
|
|
|
cd "$(dirname "$0")"
|
|
|
|
GALAXY_REPORTS_PID=${GALAXY_REPORTS_PID:-reports_webapp.pid}
|
|
GALAXY_REPORTS_LOG=${GALAXY_REPORTS_LOG:-reports_webapp.log}
|
|
PID_FILE=$GALAXY_REPORTS_PID
|
|
LOG_FILE=$GALAXY_REPORTS_LOG
|
|
|
|
. ./scripts/common_startup_functions.sh
|
|
|
|
if [ "$1" = "--sync-config" ];
|
|
then
|
|
python ./scripts/sync_reports_config.py
|
|
shift
|
|
fi
|
|
|
|
parse_common_args $@
|
|
|
|
run_common_start_up
|
|
|
|
setup_python
|
|
|
|
if [ -z "$GALAXY_REPORTS_CONFIG" ]; then
|
|
if [ -f reports_wsgi.ini ]; then
|
|
GALAXY_REPORTS_CONFIG=reports_wsgi.ini
|
|
elif [ -f config/reports_wsgi.ini ]; then
|
|
GALAXY_REPORTS_CONFIG=config/reports_wsgi.ini
|
|
elif [ -f config/reports.ini ]; then
|
|
GALAXY_REPORTS_CONFIG=config/reports.ini
|
|
elif [ -f config/reports.yml ]; then
|
|
GALAXY_REPORTS_CONFIG=config/reports.yml
|
|
else
|
|
GALAXY_REPORTS_CONFIG=config/reports.yml.sample
|
|
fi
|
|
export GALAXY_REPORTS_CONFIG
|
|
fi
|
|
|
|
if [ -n "$GALAXY_REPORTS_CONFIG_DIR" ]; then
|
|
python ./scripts/build_universe_config.py "$GALAXY_REPORTS_CONFIG_DIR" "$GALAXY_REPORTS_CONFIG"
|
|
fi
|
|
|
|
find_server $GALAXY_REPORTS_CONFIG
|
|
$run_server $server_args
|