mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-09-21 05:45:37 +08:00
16 lines
814 B
Plaintext
16 lines
814 B
Plaintext
This folder holds cron jobs that support galaxy.
|
|
|
|
updateucsc.sh is a shell script to facilitate the updates from UCSC.
|
|
Galaxy stores several files locally to speed up operations that depend
|
|
on information from UCSC. These files can all be found in the
|
|
static/ucsc folder.
|
|
|
|
Before adding updateucsc.sh to the crontab, it is important to note
|
|
two things. First, updateucsc.sh must be edited to point towards the
|
|
root galaxy directory. At the top of the file there is a variable
|
|
"GALAXY" that should be edited. Second, the updates come from UCSC
|
|
via their table browsers. While the tendency is typically to run cron
|
|
jobs late at night, UCSC, like most, tend to take down their servers
|
|
at odd hours for maintenance. The update scripts for UCSC are not CPU
|
|
intensive, and should be scheduled during normal hours.
|