Greg Von Kuster 8f6e8213a0 Fix most of the db flushes to be compatibel with sqlalchemy 05. Add the _monkeypatch_query_method() back into assignmapper due to a single object.get() method in the MetadataCollection class since Metadata has no current hook into mapping.context ( the sqlalchemy session ). There a 4 flushes in metadata,py and 20 flushes in model.__init__.py that still use the _monkeypatch_session_method in assignmapper due to the same issue, but all other flushes are fixed.

2009-11-11 15:59:41 -05:00

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build_ucsc_custom_track_code.py

Deprecated code corrections for supporting Python 2.6. Many of the Python 2.6 eggs are still throwing DeprecationWarning messages, so some things still won't work. Eggs for 2.6 need to be re-scrambled after corrections are made.

2009-08-14 15:37:31 -04:00

build_ucsc_custom_track.py

Eliminated all Python2.4 references, added necessary assert statements to ensure minimum version of Python 2.4.

2008-03-28 15:24:50 +00:00

build_ucsc_custom_track.xml

Add functioal test baseline support for the repeat construct, more work needed ( e.g., multiple repeat elements, refresh_on_change when the input to be refreshed is within a repeat construct ). Added functional tests for some tools that use this construct.

2008-11-10 14:22:01 -05:00

genetrack_indexer.py

Add Genetrack tools and display site

2009-11-06 14:22:44 -05:00

genetrack_indexer.xml

Add Genetrack tools and display site

2009-11-06 14:22:44 -05:00

genetrack_peak_prediction.py

Add Genetrack tools and display site

2009-11-06 14:22:44 -05:00

genetrack_peak_prediction.xml

Add Genetrack tools and display site

2009-11-06 14:22:44 -05:00

GMAJ.py

Update GMAJ to the latest beta.

2008-05-16 18:39:41 +00:00

GMAJ.xml

Update GMAJ help.

2008-12-04 15:09:57 -05:00

LAJ_code.py

Fix most of the db flushes to be compatibel with sqlalchemy 05. Add the _monkeypatch_query_method() back into assignmapper due to a single object.get() method in the MetadataCollection class since Metadata has no current hook into mapping.context ( the sqlalchemy session ). There a 4 flushes in metadata,py and 20 flushes in model.__init__.py that still use the _monkeypatch_session_method in assignmapper due to the same issue, but all other flushes are fixed.

2009-11-11 15:59:41 -05:00

LAJ.py

Eliminated all Python2.4 references, added necessary assert statements to ensure minimum version of Python 2.4.

2008-03-28 15:24:50 +00:00

LAJ.xml

fix some typos for tools in folders N-Z

2009-09-25 02:06:03 -04:00