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https://github.com/galaxyproject/galaxy.git
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45 lines
1.2 KiB
Python
45 lines
1.2 KiB
Python
#!/usr/bin/env python
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"""
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Connects to sites and determines which builds are available at each.
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"""
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import urllib
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import xml.etree.ElementTree as ElementTree
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sites = ['http://genome.ucsc.edu/cgi-bin/',
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'http://archaea.ucsc.edu/cgi-bin/',
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'http://genome-test.cse.ucsc.edu/cgi-bin/']
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names = ['main', 'archaea', 'test']
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def main():
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for i in range(len(sites)):
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site = sites[i] + "das/dsn"
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trackurl = sites[i] + "hgTracks?"
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builds = []
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try:
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page = urllib.urlopen(site)
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except:
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print "#Unable to connect to " + site
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continue
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text = page.read()
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try:
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tree = ElementTree.fromstring(text)
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except:
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print "#Invalid xml passed back from " + site
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continue
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print "#Harvested from", site
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for dsn in tree:
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build = dsn.find("SOURCE").attrib['id']
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builds.append(build)
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build_dict = {}
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for build in builds:
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build_dict[build] = 0
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builds = build_dict.keys()
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yield [names[i], trackurl, builds]
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if __name__ == "__main__":
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for site in main():
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print site[0] + "\t" + site[1] + "\t" + ",".join(site[2])
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