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Alexander OSTROVSKY
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76 lines
3.2 KiB
XML
76 lines
3.2 KiB
XML
<tool id="interactive_tool_radiant" tool_type="interactive" name="radiant" version="0.1">
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<description>Data analytics using Radiant R Shiny app</description>
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<requirements>
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<container type="docker">ylebras/radiant-docker</container>
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</requirements>
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<entry_points>
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<entry_point name="radiant visualisation" requires_domain="True">
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<port>3838</port>
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<url>/sample-apps/STAT/inst/app</url>
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</entry_point>
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</entry_points>
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<environment_variables>
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<environment_variable name="HISTORY_ID">$__history_id__</environment_variable>
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<environment_variable name="REMOTE_HOST">$__galaxy_url__</environment_variable>
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<environment_variable name="GALAXY_WEB_PORT">8080</environment_variable>
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<environment_variable name="GALAXY_URL">$__galaxy_url__</environment_variable>
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<environment_variable name="API_KEY" inject="api_key" />
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</environment_variables>
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<command><![CDATA[
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mkdir -p /srv/shiny-server/data/ &&
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cp '$infile' /srv/shiny-server/data/inputdata.txt &&
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mkdir -p /var/log/shiny-server &&
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chown shiny.shiny /var/log/shiny-server &&
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chown shiny.shiny /home/shiny/.Rprofile &&
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exec shiny-server >> /var/log/shiny-server.log 2>&1
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]]>
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</command>
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<inputs>
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<param name="infile" type="data" format="tabular,csv" label="tabular or csv file"/>
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</inputs>
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<outputs>
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<data name="outfile" format="txt" />
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</outputs>
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<tests>
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</tests>
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<help>
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<![CDATA[
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`Radiant <https://radiant-rstats.github.io/docs/>`_ is an open-source platform-independent browser-based interface for business analytics in R. The application is based on the Shiny package and can be run locally or on a server. Radiant was developed by Vincent Nijs. Please use the issue tracker on GitHub to suggest enhancements or report problems: https://github.com/radiant-rstats/radiant/issues. For other questions and comments please use radiant@rady.ucsd.edu.
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Key features
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- Explore: Quickly and easily summarize, visualize, and analyze your data
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- Cross-platform: It runs in a browser on Windows, Mac, and Linux
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- Reproducible: Recreate results and share work with others as a state file or an Rmarkdown report
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- Programming: Integrate Radiant’s analysis functions with your own R-code
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- Context: Data and examples focus on business applications
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.. class:: infomark
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Example input file (TAB separated)::
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"name" "longitude" "latitude" "countryCode"
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Accipiter striatus Vieillot, 1808 -60.291838 46.328137 CA
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Accipiter striatus Vieillot, 1808 -114.58927 35.022485 US
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Accipiter striatus Vieillot, 1808 -93.37406 30.00586 US
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Accipiter striatus Vieillot, 1808 -79.336288 43.682218 CA
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Accipiter striatus Vieillot, 1808 -109.156024 31.904185 US
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Accipiter striatus Vieillot, 1808 -71.098031 42.297408 US
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Accipiter striatus Vieillot, 1808 -110.927215 32.18203 US
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]]>
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</help>
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<citations>
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<citation type="bibtex">@misc{githubsurvey2018,
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author = {vnijs},
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title = {{Radiant - Business analytics using R and Shiny}},
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publisher = {Github},
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url = {https://github.com/vnijs/radiant}
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}
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}</citation>
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</citations>
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</tool>
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