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Alexander OSTROVSKY
2641c692e2
accidental files more files migrate ITs from EU accidental files more files migrate ITs from EU accidental files more files migrate ITs from EU accidental files more files
75 lines
2.4 KiB
XML
75 lines
2.4 KiB
XML
<tool id="interactive_tool_geoexplorer" tool_type="interactive" name="geoexplorer" version="0.1">
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<description>An interactive spatial analysis platform using ggvis and Leaflet</description>
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<requirements>
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<container type="docker">ylebras/geoexplorer-docker</container>
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</requirements>
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<entry_points>
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<entry_point name="geoexplorer visualisation" requires_domain="True">
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<port>3838</port>
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<url>/sample-apps/SIG/</url>
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</entry_point>
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</entry_points>
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<environment_variables>
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<environment_variable name="HISTORY_ID">$__history_id__</environment_variable>
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<environment_variable name="REMOTE_HOST">$__galaxy_url__</environment_variable>
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<environment_variable name="GALAXY_WEB_PORT">8080</environment_variable>
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<environment_variable name="GALAXY_URL">$__galaxy_url__</environment_variable>
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<environment_variable name="API_KEY" inject="api_key" />
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</environment_variables>
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<command><![CDATA[
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mkdir -p /srv/shiny-server/data/ &&
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cp '$infile' /srv/shiny-server/data/inputdata.txt &&
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mkdir -p /var/log/shiny-server &&
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chown shiny.shiny /var/log/shiny-server &&
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exec shiny-server >> /var/log/shiny-server.log 2>&1
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]]>
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</command>
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<inputs>
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<param name="infile" type="data" format="tabular,csv" label="csv file"/>
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</inputs>
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<outputs>
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<data name="outfile" format="txt" />
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</outputs>
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<tests>
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</tests>
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<help>
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<![CDATA[
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`GeoExplorer <https://radiant-rstats.github.io/docs/>`_ is An interactive spatial analysis platform using ggvis and Leaflet.
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Author: David Stephens
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App: http://www.davesteps.com/geoExploreR/
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.. class:: infomark
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**Input data file MUST have as a uniq ID per row on first column, longitude column on column 2, latitude column on column 3 and quantitative values on 4th column **
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Example input file (csv)::
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"ID" "x" "y" "test"
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01 -60.291838 46.328137 2
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02 -114.58927 35.022485 3
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03 -93.37406 30.00586 4
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04 -79.336288 43.682218 5
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05 -109.156024 31.904185 2
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06 -71.098031 42.297408 9
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07 -110.927215 32.18203 12
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]]>
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</help>
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<citations>
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<citation type="bibtex">@misc{githubsurvey2018,
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author = {davesteps},
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title = {{dashboard to visualise geographic data}},
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publisher = {Github},
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url = {https://github.com/davesteps/geoExploreR}
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}
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}</citation>
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</citations>
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</tool>
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