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107 lines
3.9 KiB
Python
107 lines
3.9 KiB
Python
from __future__ import print_function
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import logging
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import new
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try:
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from nose.tools import nottest
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except ImportError:
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def nottest(x):
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return x
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from base.driver_util import setup_keep_outdir, target_url_parts
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from base.instrument import register_job_data
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from galaxy.tools import DataManagerTool # noqa: I201
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from galaxy.tools.verify.interactor import GalaxyInteractorApi, verify_tool # noqa: I201
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from .twilltestcase import TwillTestCase
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log = logging.getLogger(__name__)
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toolbox = None
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# Do not test Data Managers as part of the standard Tool Test Framework.
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TOOL_TYPES_NO_TEST = (DataManagerTool, )
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class ToolTestCase(TwillTestCase):
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"""Abstract test case that runs tests based on a `galaxy.tools.test.ToolTest`.
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Ideally this would be FunctionalTestCase instead of a TwillTestCase but the
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subclass DataManagerToolTestCase requires the use of Twill still.
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"""
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def do_it(self, tool_id=None, tool_version=None, test_index=0, resource_parameters={}):
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"""
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Run through a tool test case.
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"""
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if tool_id is None:
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tool_id = self.tool_id
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assert tool_id
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verify_tool(tool_id, self.galaxy_interactor, resource_parameters=resource_parameters, test_index=test_index, tool_version=tool_version, register_job_data=register_job_data)
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@nottest
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def build_tests(app=None, testing_shed_tools=False, master_api_key=None, user_api_key=None):
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"""
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If the module level variable `toolbox` is set, generate `ToolTestCase`
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classes for all of its tests and put them into this modules globals() so
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they can be discovered by nose.
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"""
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# galaxy_interactor = None
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# if app is None:
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host, port, url = target_url_parts()
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keep_outputs_dir = setup_keep_outdir()
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galaxy_interactor_kwds = {
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"galaxy_url": url,
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"master_api_key": master_api_key,
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"api_key": user_api_key,
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"keep_outputs_dir": keep_outputs_dir,
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}
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galaxy_interactor = GalaxyInteractorApi(**galaxy_interactor_kwds)
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# Push all the toolbox tests to module level
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G = globals()
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# Eliminate all previous tests from G.
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for key, val in G.items():
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if key.startswith('TestForTool_'):
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del G[key]
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tests_summary = galaxy_interactor.get_tests_summary()
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for tool_id, tool_summary in tests_summary.items():
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# Create a new subclass of ToolTestCase, dynamically adding methods
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# named test_tool_XXX that run each test defined in the tool config.
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name = "TestForTool_" + tool_id.replace(' ', '_')
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baseclasses = (ToolTestCase, )
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namespace = dict()
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all_versions_test_count = 0
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for tool_version, version_summary in tool_summary.items():
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count = version_summary["count"]
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for i in range(count):
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test_function_name = 'test_tool_%06d' % all_versions_test_count
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def make_test_method(tool_version, test_index):
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def test_tool(self):
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self.do_it(tool_version=tool_version, test_index=test_index)
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test_tool.__name__ = test_function_name
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return test_tool
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test_method = make_test_method(tool_version, i)
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test_method.__doc__ = "( %s ) > Test-%d" % (tool_id, all_versions_test_count + 1)
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namespace[test_function_name] = test_method
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namespace['tool_id'] = tool_id
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namespace["galaxy_interactor"] = galaxy_interactor
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namespace['master_api_key'] = master_api_key
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namespace['user_api_key'] = user_api_key
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all_versions_test_count += 1
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# The new.classobj function returns a new class object, with name name, derived
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# from baseclasses (which should be a tuple of classes) and with namespace dict.
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new_class_obj = new.classobj(str(name), baseclasses, namespace)
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G[name] = new_class_obj
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