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galaxy/test/functional/tools/collection_creates_list_2.xml
T
2015-01-15 09:30:00 -05:00

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<tool id="collection_creates_list_2" name="collection_creates_list_2" version="0.1.0">
<!-- go through and a header to each item in a collection - should use implicit
mapping the non-collectiony add header tool to do this in a real analysis.
-->
<command>
#for $key in $list_output.keys()#
cat "$header" > "$list_output[$key]";
cat "$input_collect[$key]" >> "$list_output[$key]";
#end for#
echo 'ensure not empty';
</command>
<inputs>
<param name="header" type="data" label="Input Data" help="Input data..." />
<param name="input_collect" type="data_collection" collection_type="list" label="Input Collect" help="Input collection..." />
</inputs>
<outputs>
<collection name="list_output" type="list" label="Duplicate List" structured_like="input_collect" format_source="header">
</collection>
</outputs>
<tests>
</tests>
</tool>