Files
galaxy/tools/data_source/wormbase_test.xml
T
Daniel Blankenberg b2e2b801ea Enhance data_source.py to take advantage of the content length when known. If content length provided by external application is
greater than config.output_size_limit, no data will be retrieved and an error message will be provided to the user.

Tools using this script have been updated to provide the max file size on the command line.

Resolves ticket #93.
2009-08-03 12:02:54 -04:00

27 lines
1.2 KiB
XML

<?xml version="1.0"?>
<tool name="Wormbase" id="wormbase_test" tool_type="data_source" URL_method="post">
<description>test server</description>
<command interpreter="python">data_source.py $output $__app__.config.output_size_limit</command>
<inputs action="http://dev.wormbase.org/db/seq/gbrowse/c_elegans/" check_values="false" target="_top">
<display>go to Wormbase test server $GALAXY_URL</display>
<param name="GALAXY_URL" type="baseurl" value="/tool_runner?tool_id=wormbase_test" />
</inputs>
<request_param_translation>
<request_param galaxy_name="URL" remote_name="URL" missing="">
<add_to_url>
<param_from_source name="d" missing="" />
<param_from_source name="dbkey" missing="" />
<param_from_source name="q" missing="" />
<param_from_source name="s" missing="" />
<param_from_source name="t" missing="" />
</add_to_url>
</request_param>
<request_param galaxy_name="data_type" remote_name="data_type" missing="txt" />
</request_param_translation>
<uihints minwidth="800"/>
<outputs>
<data name="output" format="txt" />
</outputs>
<options sanitize="False" refresh="True"/>
</tool>