Ross Lazarus 26eaf7a853 Picard reorder test fix and parameter changes

2011-05-13 16:54:31 -04:00

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picard_AddOrReplaceReadGroups.xml

Fix test output for picard_ARRG.

2011-05-12 11:55:32 -04:00

picard_BamIndexStats.xml

Large push with modifications to the Picard tools recently added plus 5 new ones

2011-04-27 12:41:57 -04:00

picard_MarkDuplicates.xml

Initial commit with 5 Picard tools (AddOrReplaceReadGroups, BamIndexStats, MarkDuplicates, ReorderSam, ReplaceSamHeader). Test files are included but currently those with bam output are commented because they are failing tests but working in the browser.

2011-04-22 15:10:04 -04:00

picard_ReorderSam.xml

Picard reorder test fix and parameter changes

2011-05-13 16:54:31 -04:00

picard_ReplaceSamHeader.xml

Large push with modifications to the Picard tools recently added plus 5 new ones

2011-04-27 12:41:57 -04:00

picard_wrapper.py

Picard reorder test fix and parameter changes

2011-05-13 16:54:31 -04:00

rgPicardASMetrics.xml

Grrrr. Must have index - trying hg19 to see if that pleases the buildbot on picard asmetrics

2011-05-09 11:07:01 -04:00

rgPicardFixMate.xml

lots of small tweaks and some new picard metrics - Hs and libcomplexity. Includes an option to use the input data genome for a reference where a reference genome is needed - helps prevent new user head scratching - this really should be added (eg) the bwa and other wrappers too?

2011-05-07 11:56:12 -04:00

rgPicardGCBiasMetrics.xml

fix history reference parameter name in gcbias and index reference in ASmetrics

2011-05-08 15:59:28 -04:00

rgPicardHsMetrics.xml

lots of small tweaks and some new picard metrics - Hs and libcomplexity. Includes an option to use the input data genome for a reference where a reference genome is needed - helps prevent new user head scratching - this really should be added (eg) the bwa and other wrappers too?

2011-05-07 11:56:12 -04:00

rgPicardInsertSize.xml

Reordersam fails silently if contig names do not match so added an html log where this can be seen easily. Updated insertsize test

2011-05-13 15:23:32 -04:00

rgPicardLibComplexity.xml

picard test tweaks: added test output for Hsmetrics and extend allowable lines to 30 for estlibcomplexity test

2011-05-08 08:47:53 -04:00

rgPicardMarkDups.xml

Large push with modifications to the Picard tools recently added plus 5 new ones

2011-04-27 12:41:57 -04:00