Daniel Blankenberg d95c6b2e52 Add IGV as an external display application. Contributed by Tobias Wohlfrom. ...

Provides two links for IGV:
1) web - to view with Java web start IGV if the user has no IGV installed
2) local - to view in the user's running IGV instance (requires remote port enabled in IGV)

2011-03-23 09:57:06 -04:00

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ensembl

Add support for displaying BAM files at Ensembl

2010-10-06 11:03:28 -04:00

gbrowse

Add new-style display applications for GBrowse for gff, interval, and wig; only interval is enabled by default, the other two use existing methods. Still working on SAM and BAM for GBrowse.

2010-07-23 16:45:41 -04:00

igv

Add IGV as an external display application. Contributed by Tobias Wohlfrom.

2011-03-23 09:57:06 -04:00

ucsc

Apply patch from Brad Chapman providing support for detecting, uploading and displaying UCSC bigWig and bigBed. Add new functional tests for uploading and detecting bigbed and bigwig formats, and correct and clean up the test_get_data.py functional test script.

2010-08-19 13:58:10 -04:00

genetrack.xml

Add bed6 and bed12 datatypes, which are subclasses of bedstrict; converters are available to turn any interval datatype into these types. Change GeneTrack Indexer tool and converter to use bed6 as input.

2010-04-01 13:08:48 -04:00