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Nicola Soranzo
f865e8359f
Also: - dos2unix test/functional/tools/for_workflows/head.xml - Single-quote text and data params in `<command/>` - Remove deprecated `interpreter` attribute of `<command />`
66 lines
2.1 KiB
XML
66 lines
2.1 KiB
XML
<tool id="random_lines1" name="Select random lines" version="2.0.2">
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<description>from a file</description>
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<command>
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python '$__tool_directory__/random_lines_two_pass.py' '${input}' '${out_file1}' '${num_lines}'
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#if str( $seed_source.seed_source_selector ) == "set_seed":
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--seed '${seed_source.seed}'
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#end if
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</command>
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<inputs>
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<param name="num_lines" type="integer" value="1" label="Randomly select" help="lines"/>
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<param name="input" type="data" format="txt" label="from"/>
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<conditional name="seed_source">
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<param name="seed_source_selector" type="select" label="Set a random seed">
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<option value="no_seed" selected="True">Don't set seed</option>
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<option value="set_seed">Set seed</option>
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</param>
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<when value="no_seed">
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<!-- Do nothing here -->
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</when>
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<when value="set_seed">
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<param name="seed" type="text" label="Random seed" />
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</when>
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</conditional>
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</inputs>
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<outputs>
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<data name="out_file1" format="input" metadata_source="input"/>
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</outputs>
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<tests>
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<test>
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<param name="num_lines" value="65"/>
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<param name="input" value="1.bed"/>
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<param name="seed_source_selector" value="no_seed"/>
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<output name="out_file1" file="1.bed"/>
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</test>
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<test>
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<param name="num_lines" value="1"/>
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<param name="input" value="1.bed"/>
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<param name="seed_source_selector" value="set_seed"/>
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<param name="seed" value="asdf"/>
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<output name="out_file1" file="1_bed_random_lines_1_seed_asdf_out.bed"/>
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</test>
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</tests>
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<help>
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**What it does**
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This tool selects N random lines from a file, with no repeats, and preserving ordering.
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-----
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**Example**
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Input File::
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chr7 56632 56652 D17003_CTCF_R6 310 +
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chr7 56736 56756 D17003_CTCF_R7 354 +
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chr7 56761 56781 D17003_CTCF_R4 220 +
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chr7 56772 56792 D17003_CTCF_R7 372 +
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chr7 56775 56795 D17003_CTCF_R4 207 +
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Selecting 2 random lines might return this::
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chr7 56736 56756 D17003_CTCF_R7 354 +
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chr7 56775 56795 D17003_CTCF_R4 207 +
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</help>
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</tool>
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