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galaxy/tools/emboss/emboss_freak.xml
T

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XML

<tool id="EMBOSS: freak36" name="freak">
<description>Residue/base frequency table or plot</description>
<command>freak -seqall $input1 -outfile $out_file1 -window $window -letters $letters -step $step -auto</command>
<inputs>
<param format="data" name="input1" type="data">
<label>Sequences</label>
</param>
<param name="letters" size="5" type="text" value="gc">
<label>Residue letters</label>
</param>
<param name="step" size="5" type="text" value="1">
<label>Stepping value</label>
</param>
<param name="window" size="5" type="text" value="30">
<label>Averaging window</label>
</param>
</inputs>
<outputs>
<data format="txt" name="out_file1" />
</outputs>
<help>
You can view the original documentation here_.
.. _here: http://emboss.sourceforge.net/apps/release/4.0/emboss/apps/freak.html
</help>
</tool>