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32 lines
1.2 KiB
XML
32 lines
1.2 KiB
XML
<tool id="EMBOSS: einverted28" name="einverted">
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<description>Finds DNA inverted repeats</description>
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<command>einverted -sequence $input1 -outfile $out_file1 -gap $gap -threshold $threshold -match $match -mismatch $mismatch -maxrepeat $maxrepeat -auto</command>
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<inputs>
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<param format="data" name="input1" type="data">
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<label>On query</label>
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</param>
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<param name="gap" size="4" type="text" value="12">
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<label>Gap penalty</label>
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</param>
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<param name="threshold" size="4" type="text" value="50">
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<label>Minimum score threshold</label>
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</param>
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<param name="match" size="4" type="text" value="3">
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<label>Match score</label>
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</param>
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<param name="mismatch" size="4" type="text" value="-4">
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<label>Mismatch score</label>
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</param>
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<param name="maxrepeat" size="4" type="text" value="4000">
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<label>Maximum separation between the start of repeat and the end of the inverted repeat</label>
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</param>
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</inputs>
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<outputs>
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<data format="txt" name="out_file1" />
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</outputs>
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<help>
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You can view the original documentation here_.
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.. _here: http://emboss.sourceforge.net/apps/release/4.0/emboss/apps/einverted.html
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</help>
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</tool> |