Nicola Soranzo b5c7e2c86a Replace `self.assert* method calls with plain asserts in test/` ...

using https://github.com/pytest-dev/unittest2pytest with the following command:

```
unittest2pytest -f self_assert -w -n test/
```

(excluding ``self.assertRaises*`` method calls).

2022-09-21 23:50:05 +01:00

..

chained_dyndest_rules

Apply black formatting.

2022-02-03 07:42:20 -05:00

cloudauthz

Apply black formatting.

2022-02-03 07:42:20 -05:00

delay_rules

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mock_biotools_content/data

Parse edam operation and topic data from bio.tools if available.

2021-09-07 14:29:38 -04:00

objectstore

Merge pull request #13655 from mvdbeek/metadata_embed

2022-06-07 10:27:06 -04:00

objectstore_selection_rules

Apply black formatting.

2022-02-03 07:42:20 -05:00

panel_views_1

Allow static panel views without explicit "items" - just start with integrated panel and apply filters.

2021-09-15 10:50:57 -04:00

resubmission_rules

Apply black formatting.

2022-02-03 07:42:20 -05:00

webdav

…

__init__.py

…

chained_dyndest_job_conf.xml

…

conftest.py

Enable celery in API, Selenium, Integration tests

2022-05-25 19:46:47 +02:00

delay_job_conf.yml

Allow specifying useful classes of tools for mapping in job conf.

2021-07-14 13:46:56 -04:00

dockerized_job_conf.yml

Support setting per-job-environment container resolvers using the container_resolvers key in the environment config.

2021-08-17 10:28:51 -04:00

embedded_pulsar_docker_job_conf.yml

Drop more uWSGI legacy things

2022-03-15 21:32:00 +01:00

embedded_pulsar_job_conf.xml

Use remote_metadata: true when using extended metadata

2021-10-26 17:59:05 +02:00

embedded_pulsar_metadata_extended_job_conf.yml

Allow specifying useful classes of tools for mapping in job conf.

2021-07-14 13:46:56 -04:00

embedded_pulsar_metadata_job_conf.yml

Allow specifying useful classes of tools for mapping in job conf.

2021-07-14 13:46:56 -04:00

embedded_pulsar_singularity_job_conf.yml

Allow specifying useful classes of tools for mapping in job conf.

2021-07-14 13:46:56 -04:00

file_sources_conf_vault.yml

Add new secret type to user preferences that is not sent to client

2021-12-01 10:48:36 +05:30

file_sources_conf.yml

…

handler_template_job_conf.xml

…

io_injection_job_conf.yml

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refgenie.yml

add more tests

2021-03-25 14:01:17 +01:00

resubmission_default_job_conf.yml

Allow specifying useful classes of tools for mapping in job conf.

2021-07-14 13:46:56 -04:00

resubmission_dynamic_job_conf.xml

Allow specifying useful classes of tools for mapping in job conf.

2021-07-14 13:46:56 -04:00

resubmission_job_conf.yml

Allow specifying useful classes of tools for mapping in job conf.

2021-07-14 13:46:56 -04:00

resubmission_job_resource_parameters_conf.xml

…

resubmission_pulsar_job_conf.xml

Allow specifying useful classes of tools for mapping in job conf.

2021-07-14 13:46:56 -04:00

resubmission_runners.py

Apply black formatting.

2022-02-03 07:42:20 -05:00

resubmission_small_memory_job_conf.xml

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resubmission_small_memory_resubmission_to_large_job_conf.xml

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resubmission_tool_detected_always_error_job_conf.xml

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resubmission_tool_detected_resubmit_job_conf.xml

…

sets_tmp_dir_expression_job_conf.xml

Fix another integration test

2021-02-25 13:49:58 +01:00

sets_tmp_dir_to_true_job_conf.xml

…

simple_job_conf.xml

…

singularity_job_conf.yml

Support setting per-job-environment container resolvers using the container_resolvers key in the environment config.

2021-08-17 10:28:51 -04:00

test_async_downloads.py

Drop redundant UsesCeleryTasks

2022-05-26 12:48:44 +02:00

test_celery_tasks.py

Enable celery in API, Selenium, Integration tests

2022-05-25 19:46:47 +02:00

test_chained_dynamic_destinations.py

Use celery in more integration tests

2022-05-26 12:48:44 +02:00

test_change_datatype_with_store_by_id.py

…

test_cli_runners.py

Mark openPBS integration test cases as xfail

2022-06-20 16:04:28 +02:00

test_config_options_users.py

Use celery in more integration tests

2022-05-26 12:48:44 +02:00

test_config_schema.py

Apply black formatting.

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test_configuration_decode.py

Apply black formatting.

2022-02-03 07:42:20 -05:00

test_containerized_jobs.py

Use celery in more integration tests

2022-05-26 12:48:44 +02:00

test_data_manager_refgenie.py

Move `uses_shed.py to galaxy_test.driver`

2022-06-28 18:33:05 +01:00

test_data_manager.py

Move `uses_shed.py to galaxy_test.driver`

2022-06-28 18:33:05 +01:00

test_datatype_upload.py

Give a hint about newlines when datatype test fails

2022-08-29 17:53:00 +02:00

test_default_permissions.py

Use celery in more integration tests

2022-05-26 12:48:44 +02:00

test_dynamic_edam_loading.py

Use celery in more integration tests

2022-05-26 12:48:44 +02:00

test_edam_toolbox.py

Use celery in more integration tests

2022-05-26 12:48:44 +02:00

test_extended_metadata_mapping.py

Apply black formatting.

2022-02-03 07:42:20 -05:00

test_extended_metadata_outputs_to_working_directory.py

Apply black formatting.

2022-02-03 07:42:20 -05:00

test_extended_metadata.py

Test deferred data with extended metadata and metadata files

2022-06-25 12:55:51 +02:00

test_fail_job_tool_unavailable.py

Use celery in more integration tests

2022-05-26 12:48:44 +02:00

test_fluent_metrics.py

Use celery in more integration tests

2022-05-26 12:48:44 +02:00

test_flush_per_n_datasets.py

Use celery in more integration tests

2022-05-26 12:48:44 +02:00

test_galaxy_interactor.py

Apply black formatting.

2022-02-03 07:42:20 -05:00

test_genomes.py

Use celery in more integration tests

2022-05-26 12:48:44 +02:00

test_handler_assignment_methods.py

Use celery in more integration tests

2022-05-26 12:48:44 +02:00

test_history_import_export.py

Drop global setup_celery_includes

2022-05-27 17:33:55 +02:00

test_interactivetools_api.py

Raise exception when waiting for entry point

2022-03-15 21:32:00 +01:00

test_job_environments.py

Use celery in more integration tests

2022-05-26 12:48:44 +02:00

test_job_files.py

Code cleanups from pyupgrade

2022-07-12 13:40:36 +01:00

test_job_outputs_to_working_directory.py

Use celery in more integration tests

2022-05-26 12:48:44 +02:00

test_job_recovery.py

Use celery in more integration tests

2022-05-26 12:48:44 +02:00

test_job_resubmission.py

Use celery in more integration tests

2022-05-26 12:48:44 +02:00

test_kubernetes_runner.py

Fix f-string, use function instead of lambda

2022-06-20 07:41:47 +02:00

test_kubernetes_staging.py

Switch most tests to use `__DATA_FETCH__ instead of upload1`

2022-04-23 12:05:54 +02:00

test_local_job_cancellation.py

Apply black formatting.

2022-02-03 07:42:20 -05:00

test_materialize_dataset_instance_tasks.py

Drop global setup_celery_includes

2022-05-27 17:33:55 +02:00

test_max_discovered_files.py

Use celery in more integration tests

2022-05-26 12:48:44 +02:00

test_model_store_scripts.py

Add DEFERRED datasets to Galaxy

2022-05-23 19:48:47 -04:00

test_page_revision_json_encoding.py

Apply black formatting.

2022-02-03 07:42:20 -05:00

test_panel_views.py

Use celery in more integration tests

2022-05-26 12:48:44 +02:00

test_pulsar_embedded_containers.py

Use celery in more integration tests

2022-05-26 12:48:44 +02:00

test_pulsar_embedded_copy_working.py

…

test_pulsar_embedded_extended_metadata.py

Apply black formatting.

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test_pulsar_embedded_mq.py

Apply black formatting.

2022-02-03 07:42:20 -05:00

test_pulsar_embedded_remote_metadata.py

Apply black formatting.

2022-02-03 07:42:20 -05:00

test_pulsar_embedded.py

Use celery in more integration tests

2022-05-26 12:48:44 +02:00

test_quota.py

Use celery in more integration tests

2022-05-26 12:48:44 +02:00

test_remote_files_histories.py

Apply black formatting.

2022-02-03 07:42:20 -05:00

test_remote_files_posix.py

Update integration test

2022-08-05 15:56:21 +02:00

test_remote_files.py

Use celery in more integration tests

2022-05-26 12:48:44 +02:00

test_repository_operations.py

Move `uses_shed.py to galaxy_test.driver`

2022-06-28 18:33:05 +01:00

test_resolvers.py

Use celery in more integration tests

2022-05-26 12:48:44 +02:00

test_save_job_id_on_datasets.py

Apply black formatting.

2022-02-03 07:42:20 -05:00

test_scripts.py

Add create/migrate scripts for Alembic dbs (squashed)

2022-03-09 18:41:02 -05:00

test_shed_tool_tests.py

Remove custom datatype installation from the tool shed.

2022-08-29 13:26:52 -04:00

test_tool_data_delete.py

Replace `self.assert* method calls with plain asserts in test/`

2022-09-21 23:50:05 +01:00

test_upload_configuration_options.py

Use celery in more integration tests

2022-05-26 12:48:44 +02:00

test_vault_extra_prefs.py

Replace `self.assert* method calls with plain asserts in test/`

2022-09-21 23:50:05 +01:00

test_vault_file_source.py

Use celery in more integration tests

2022-05-26 12:48:44 +02:00

test_web_framework_config.py

Use celery in more integration tests

2022-05-26 12:48:44 +02:00

test_webdav.py

Use celery in more integration tests

2022-05-26 12:48:44 +02:00

test_work_queue_put_failure.py

Make sure test_job_fails actually passes through job runner

2022-05-26 12:48:44 +02:00

test_workflow_handler_configuration.py

Apply black formatting.

2022-02-03 07:42:20 -05:00

test_workflow_invocation.py

Replace `self.assert* method calls with plain asserts in test/`

2022-09-21 23:50:05 +01:00

test_workflow_refactoring.py

Rework uses_shed...

2022-07-05 13:43:04 +01:00

test_workflow_scheduling_options.py

Replace `self.assert* method calls with plain asserts in test/`

2022-09-21 23:50:05 +01:00

test_workflow_sync.py

Use celery in more integration tests

2022-05-26 12:48:44 +02:00

test_workflow_tasks.py

Fix export ro-crate to file source

2022-09-16 17:19:49 +02:00

user_preferences_extra_conf.yml

Change vault api test case to integration test case and add missing conditional requirements

2021-12-20 18:23:00 +05:30

vault_conf.yml

Make sure filesources can access user level and app level vaults

2021-11-28 06:56:35 +05:30

workflow_handler_configuration_job_conf.xml

…