Greg Von Kuster 2da6139199 More fixes for twill 0.9, the annotation profiler tests do not yet pass, but all else should work now, more tests coming soon.

2008-09-05 16:36:51 -04:00

..

basecoverage.xml

Completed an old FIXME in DefaultToolAction.execute() - metadata no longer added to "incoming". Tool config params changed from things like$input_chromCol to ${input.metadata.chromCol}.

2008-07-23 15:27:39 -04:00

cluster.xml

Completed an old FIXME in DefaultToolAction.execute() - metadata no longer added to "incoming". Tool config params changed from things like$input_chromCol to ${input.metadata.chromCol}.

2008-07-23 15:27:39 -04:00

complement.xml

Completed an old FIXME in DefaultToolAction.execute() - metadata no longer added to "incoming". Tool config params changed from things like$input_chromCol to ${input.metadata.chromCol}.

2008-07-23 15:27:39 -04:00

concat.xml

Completed an old FIXME in DefaultToolAction.execute() - metadata no longer added to "incoming". Tool config params changed from things like$input_chromCol to ${input.metadata.chromCol}.

2008-07-23 15:27:39 -04:00

coverage.xml

Completed an old FIXME in DefaultToolAction.execute() - metadata no longer added to "incoming". Tool config params changed from things like$input_chromCol to ${input.metadata.chromCol}.

2008-07-23 15:27:39 -04:00

flanking_features.py

Bug fixes, miscellaneous cleanup for flanking_features, windowSplitter, quality_filter, featureCounter, get_flanks.

2008-05-27 14:28:49 +00:00

flanking_features.xml

Completed an old FIXME in DefaultToolAction.execute() - metadata no longer added to "incoming". Tool config params changed from things like$input_chromCol to ${input.metadata.chromCol}.

2008-07-23 15:27:39 -04:00

get_flanks.py

Bug fixes, miscellaneous cleanup for flanking_features, windowSplitter, quality_filter, featureCounter, get_flanks.

2008-05-27 14:28:49 +00:00

get_flanks.xml

Completed an old FIXME in DefaultToolAction.execute() - metadata no longer added to "incoming". Tool config params changed from things like$input_chromCol to ${input.metadata.chromCol}.

2008-07-23 15:27:39 -04:00

gops_basecoverage.py

Corrected the way we handle exceptions in the gops tools when building / using bitsets dictionaries. Added several new functional tests.

2008-05-23 20:43:20 +00:00

gops_cluster.py

Corrected the way we handle exceptions in the gops tools when building / using bitsets dictionaries. Added several new functional tests.

2008-05-23 20:43:20 +00:00

gops_complement.py

Move ucsc and gbrowse data from static to tool-data/shared.

2008-06-03 18:53:26 +00:00

gops_concat.py

Corrected the way we handle exceptions in the gops tools when building / using bitsets dictionaries. Added several new functional tests.

2008-05-23 20:43:20 +00:00

gops_coverage.py

Corrected the way we handle exceptions in the gops tools when building / using bitsets dictionaries. Added several new functional tests.

2008-05-23 20:43:20 +00:00

gops_intersect.py

Corrected the way we handle exceptions in the gops tools when building / using bitsets dictionaries. Added several new functional tests.

2008-05-23 20:43:20 +00:00

gops_join.py

Corrected the way we handle exceptions in the gops tools when building / using bitsets dictionaries. Added several new functional tests.

2008-05-23 20:43:20 +00:00

gops_merge.py

Corrected the way we handle exceptions in the gops tools when building / using bitsets dictionaries. Added several new functional tests.

2008-05-23 20:43:20 +00:00

gops_subtract.py

Corrected the way we handle exceptions in the gops tools when building / using bitsets dictionaries. Added several new functional tests.

2008-05-23 20:43:20 +00:00

intersect.xml

More fixes for twill 0.9, the annotation profiler tests do not yet pass, but all else should work now, more tests coming soon.

2008-09-05 16:36:51 -04:00

join.xml

Completed an old FIXME in DefaultToolAction.execute() - metadata no longer added to "incoming". Tool config params changed from things like$input_chromCol to ${input.metadata.chromCol}.

2008-07-23 15:27:39 -04:00

merge.xml

Completed an old FIXME in DefaultToolAction.execute() - metadata no longer added to "incoming". Tool config params changed from things like$input_chromCol to ${input.metadata.chromCol}.

2008-07-23 15:27:39 -04:00

operation_filter.py

Separate framework and tool environments.

2008-04-11 20:11:21 +00:00

subtract_query.py

Separate framework and tool environments.

2008-04-11 20:11:21 +00:00

subtract_query.xml

Eliminated all Python2.4 references, added necessary assert statements to ensure minimum version of Python 2.4.

2008-03-28 15:24:50 +00:00

subtract.xml

More fixes for twill 0.9, the annotation profiler tests do not yet pass, but all else should work now, more tests coming soon.

2008-09-05 16:36:51 -04:00