Nicola Soranzo 30f60493c3 Format Python code with black 23.1.0 ...

with manual fixes to 3 files to make them compatible with black 22.12.0 .

We need to keep black pinned at `<23` until we vendorise `packaging`, since
the new version of black depends on `packaging >=22.0` which is the version
where `LegacyVersion` (which we use for tool lineages) was removed.

2023-02-01 23:51:03 +00:00

..

data_export

Add linting with ruff

2023-01-16 14:34:56 +00:00

data_source

Format Python code with black 23.1.0

2023-02-01 23:51:03 +00:00

evolution

Apply black to tools as well

2022-02-03 09:12:13 -05:00

expression_tools

Fix typos

2022-09-09 17:20:23 +01:00

extract

Apply black to tools as well

2022-02-03 09:12:13 -05:00

filters

Use format_source="input" instead of format="input"

2023-01-13 10:58:57 +01:00

interactive

Update interactivetool_ml_jupyter_notebook.xml

2023-01-24 16:02:15 +01:00

maf

partially revert d674f2ba6e

2022-09-26 11:24:56 +02:00

meme

Apply black to tools as well

2022-02-03 09:12:13 -05:00

metag_tools

Apply black to tools as well

2022-02-03 09:12:13 -05:00

next_gen_conversion

Apply black to tools as well

2022-02-03 09:12:13 -05:00

ngs_simulation

Apply black to tools as well

2022-02-03 09:12:13 -05:00

phenotype_association

Fix david url

2022-04-04 15:11:22 +02:00

plotting

Apply black to tools as well

2022-02-03 09:12:13 -05:00

solid_tools

Format Python code with black 23.1.0

2023-02-01 23:51:03 +00:00

sr_assembly

Apply black to tools as well

2022-02-03 09:12:13 -05:00

sr_mapping

Apply black to tools as well

2022-02-03 09:12:13 -05:00

stats

Format Python code with black 23.1.0

2023-02-01 23:51:03 +00:00

__init__.py

Rev mypy.

2021-04-23 14:49:53 -04:00