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Enis Afgan
62 lines
2.3 KiB
XML
62 lines
2.3 KiB
XML
<tool id="interactive_tool_wallace" tool_type="interactive" name="Wallace" version="0.1">
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<icon src="wallace.png" />
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<description>Webbased Interactive modeling of species niches and distributions</description>
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<requirements>
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<container type="docker">ylebras/wallace-docker</container>
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</requirements>
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<entry_points>
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<entry_point name="Wallace visualisation" requires_domain="True">
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<port>3838</port>
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<url>/sample-apps/SIG/wallace/shiny/</url>
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</entry_point>
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</entry_points>
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<environment_variables>
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<environment_variable name="HISTORY_ID" strip="True">${__app__.security.encode_id($outfile.history_id)}</environment_variable> <!-- FIXME: Warning: The use of __app__ is deprecated and will break backward compatibility in the near future -->
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<environment_variable name="REMOTE_HOST">$__galaxy_url__</environment_variable>
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<environment_variable name="GALAXY_WEB_PORT">8080</environment_variable>
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<environment_variable name="GALAXY_URL">$__galaxy_url__</environment_variable>
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<environment_variable name="API_KEY" inject="api_key" />
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</environment_variables>
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<command><![CDATA[
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/usr/bin/shiny-server.sh
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]]>
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</command>
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<inputs>
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<!--param name="infile" type="data" format="csv" label="csv file with for first columns: 'name', 'longitude', 'latitude' informations"/-->
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</inputs>
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<outputs>
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<data name="outfile" format="txt" />
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</outputs>
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<tests>
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</tests>
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<help>
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<![CDATA[
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`Wallace <https://wallaceecomod.github.io/>`_ is a flexible platform for reproducible modeling of species niches and distributions.
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.. class:: infomark
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Example input file (TAB separated)::
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"name" "longitude" "latitude" "countryCode"
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Accipiter striatus Vieillot, 1808 -60.291838 46.328137 CA
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Accipiter striatus Vieillot, 1808 -114.58927 35.022485 US
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Accipiter striatus Vieillot, 1808 -93.37406 30.00586 US
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Accipiter striatus Vieillot, 1808 -79.336288 43.682218 CA
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Accipiter striatus Vieillot, 1808 -109.156024 31.904185 US
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Accipiter striatus Vieillot, 1808 -71.098031 42.297408 US
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Accipiter striatus Vieillot, 1808 -110.927215 32.18203 US
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]]>
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</help>
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<citations>
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<citation type="doi">10.1111/2041-210X.12945</citation>
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</citations>
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</tool>
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