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https://github.com/galaxyproject/galaxy.git
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Gianmauro Cuccuru
45 lines
1.7 KiB
XML
45 lines
1.7 KiB
XML
<tool id="interactive_tool_vrm_editor" tool_type="interactive" name="VRM Editor" version="@VERSION@" profile="22.01">
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<description>interative tool for creating Variable Resolution Mesh for NorESM/CESM</description>
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<macros>
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<token name="@VERSION@">0.2.1</token>
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</macros>
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<requirements>
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<container type="docker">quay.io/nordicesmhub/docker-vrm-editor:@VERSION@</container>
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</requirements>
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<entry_points>
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<entry_point name="VRM Editor with $infile.display_name" requires_domain="True">
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<port>5800</port>
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</entry_point>
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</entry_points>
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<command detect_errors="exit_code">
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<![CDATA[
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mkdir output &&
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mkdir /config/home &&
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mkdir /config/home/output &&
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export HOME=/config/home &&
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cp '$infile' '/config/home/$infile.display_name' &&
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/init ;
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echo "Galaxy VRM Editor version @VERSION@" > output/version.txt &&
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cp /config/home/output/* output/ | true &&
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cd output &&
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sleep 2 &&
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for file in *; do mv "\$file" "\${file// /_}"; done &&
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for file in *; do mv "\$file" "\$file.\${file\#\#*.}"; done
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]]>
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</command>
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<inputs>
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<param name="infile" type="data" format="txt,netcdf,h5" label="input" optional="true" />
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</inputs>
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<outputs>
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<collection name="outputs" type="list" label="VRM Editor outputs">
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<discover_datasets pattern="__name_and_ext__" directory="output" />
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</collection>
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</outputs>
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<tests>
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</tests>
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<help><![CDATA[
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`VRM Editor <https://github.com/ESMCI/Community_Mesh_Generation_Toolkit>`_ is a tool to create Variable Resolution Spectral Element Grids in CESM/NorESM.
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]]>
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</help>
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</tool>
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