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Helena Rasche
33 lines
1.9 KiB
XML
33 lines
1.9 KiB
XML
<tool id="Featured datasets4" name="Featured datasets" version="1.0.0">
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<description>(PSU prepared queries)</description>
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<edam_operations>
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<edam_operation>operation_0224</edam_operation>
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</edam_operations>
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<command><![CDATA[
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python '$__tool_directory__/import.py' $data '$output'
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]]></command>
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<inputs>
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<display>$data</display>
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<param name="data" type="select" display="radio">
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<option value="eryth">Erythroid predicted cis-regulatory modules</option>
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<option value="exons">Exons of protein-coding genes in the mouse genome, assembly mm3</option>
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<option value="cishg16 ">Known cis-regulatory modules in the human HBB gene complex (hg16)</option>
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<option value="cishg17">Known cis-regulatory modules in the human HBB gene complex (hg17)</option>
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<option value="krhg16">Known regulatory regions (hg16)</option>
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<option value="krhg17">Known regulatory regions (hg17)</option>
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<option value="tARhg16mmc">Human (hg16) evolutionary cold region (vs mouse)</option>
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<option value="tARhg16mmm">Human (hg16) evolutionary medium region (vs mouse)</option>
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<option value="tARhg16mmh">Human (hg16) evolutionary hot region (vs mouse)</option>
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<option value="tARhg16rnc">Human (hg16) evolutionary cold region (vs rat)</option>
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<option value="tARhg16rnm">Human (hg16) evolutionary medium region (vs rat)</option>
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<option value="tARhg16rnh">Human (hg16) evolutionary hot region (vs rat)</option>
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<option value="phastConsHg16">phastCons hg16 (stringent, top ~5%) from UCSC</option>
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<option value="omimhg16">OMIM disorders (hg16)</option>
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<option value="omimhg17">OMIM disorders (hg17)</option>
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</param>
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</inputs>
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<outputs>
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<data name="output" format="bed" />
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</outputs>
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</tool>
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