create a random set of intervals random_intervals_no_bits.py $regions $input2 $input1 $out_file1 $input2_chromCol $input2_startCol $input2_endCol $input1_chromCol $input1_startCol $input1_endCol $input1_strandCol $use_mask $strand_overlaps No Yes Any Across Strands None .. class:: warningmark This tool currently only works with data from genome builds hg16 or hg17. ----- .. class:: infomark **Note:** If you do not wish to mask a set of intervals, change the Use Mask option to No, this option will override any Mask files selected. ----- **Syntax** This tool will attempt to create a random set of intervals that mimic those found within your source file. You may also specify a set of intervals to mask. **Allow overlaps** options * **Across Strands** - random regions are allowed to overlap only if they are on different strands. * **Any** - all overlaps are allowed. * **None** - no overlapping regions are allowed. **Regions to use** options * Bounding region of interest based on the dataset build.