$hg16
.. class:: warningmark
The data in this section is intended as a supplement for this manuscript_. Use the **Get Data->UCSC Main** tool for current ENCODE data.
.. _manuscript: http://www.genome.org/cgi/content/full/17/6/960
For detailed information about data deposition and partitioning, click here_.
.. _here: http://genome.imim.es/gencode/wiki/index.php/Collecting_Feature_Sets_from_All_Analysis_Groups
*[gencode_partitioned]* means that the dataset was partitioned according to the protocol below:
A partition scheme has been defined that is similar to what has previously been done with TARs/TRANSFRAGs such that any feature can be classified as falling into one of the following 6 categories:
1. **Coding** -- coding exons defined from the GENCODE experimentally verified coding set (coding in any transcript)
2. **5UTR** -- 5' UTR exons defined from the GENCODE experimentally verified coding set (5' UTR in some transcript but never coding in any other)
3. **3UTR** -- 3' UTR exons defined from the GENCODE experimentally verified coding set (3' UTR in some transcript but never coding in any other)
4. **Intronic Proximal** -- intronic and no more than 5kb away from an exon.
5. **Intergenic Proximal** -- between genes and no more than 5kb away from an exon.
6. **Intronic Distal** -- intronic and greater than 5kb away from an exon.
7. **Intergenic Distal** -- between genes and greater than 5kb away from an exon.
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.. class:: infomark
**Note:** Features overlapping more than one partition will take the identity of the lower-numbered partition.