#!/usr/bin/env python """ Populates blank uuid fields in datasets with randomly generated values Going forward, these ids will be generated for all new datasets. This script fixes datasets that were generated before the change. """ import sys import uuid from galaxy.model import mapping from galaxy.model.orm.scripts import get_config assert sys.version_info[:2] >= ( 2, 4 ) def usage(prog) : print "usage: %s galaxy.ini" % prog print """ Populates blank uuid fields in datasets with randomly generated values. Going forward, these ids will be generated for all new datasets. This script fixes datasets that were generated before the change. """ def main(): if len(sys.argv) != 2 or sys.argv == "-h" or sys.argv == "--help" : usage(sys.argv[0]) sys.exit() ini_file = sys.argv.pop(1) config = get_config(ini_file) model = mapping.init( ini_file, config['db_url'], create_tables=False ) for row in model.context.query( model.Dataset ): if row.uuid is None: row.uuid = uuid.uuid4() print "Setting dataset:", row.id, " UUID to ", row.uuid model.context.flush() for row in model.context.query( model.Workflow ): if row.uuid is None: row.uuid = uuid.uuid4() print "Setting Workflow:", row.id, " UUID to ", row.uuid model.context.flush() if __name__ == "__main__": main()