import argparse import json import requests import yaml def main(): parser = argparse.ArgumentParser(description='Upload a directory into a data library') parser.add_argument("-u", "--url", dest="url", required=True, help="Galaxy URL") parser.add_argument("-a", "--api", dest="api_key", required=True, help="API Key") parser.add_argument('target', metavar='FILE', type=str, help='file describing data library to fetch') args = parser.parse_args() with open(args.target) as f: target = yaml.safe_load(f) histories_url = args.url + "/api/histories" new_history_response = requests.post(histories_url, data={'key': args.api_key}) fetch_url = args.url + '/api/tools/fetch' payload = { 'key': args.api_key, 'targets': json.dumps([target]), 'history_id': new_history_response.json()["id"] } response = requests.post(fetch_url, data=payload) print(response.content) if __name__ == '__main__': main()