#!/usr/bin/env python """ Server for realtime Galaxy communication. At first you need to install a few requirements. . GALAXY_ROOT/.venv/bin/activate # activate Galaxy's virtualenv pip install flask flask-socketio eventlet # install the requirements As a next step start the communication server with something like this: ./scripts/communication_server.py --port 7070 --host localhost Please make sure the host and the port matches the ones on config/galaxy.ini The communication server feature of Galaxy can be controlled on three different levels: 1. Admin can activate/deactivate communication (config/galaxy.ini) 2. User can actrivate/deactivate for one session (in the communication window) 3. User can actrivate/deactivate as personal-setting for ever (Galaxy user preferences) """ import sys import argparse from flask import Flask, request, make_response, current_app from flask_socketio import SocketIO, emit, disconnect from datetime import timedelta from functools import update_wrapper app = Flask(__name__) app.config['SECRET_KEY'] = 'notscret' socketio = SocketIO(app) # Taken from flask.pocoo.org/snippets/56/ def crossdomain(origin=None, methods=None, headers=None, max_age=21600, attach_to_all=True, automatic_options=True): if methods is not None: methods = ', '.join(sorted(x.upper() for x in methods)) if headers is not None and not isinstance(headers, basestring): headers = ', '.join(x.upper() for x in headers) if not isinstance(origin, basestring): origin = ', '.join(origin) if isinstance(max_age, timedelta): max_age = max_age.total_seconds() def get_methods(): if methods is not None: return methods options_resp = current_app.make_default_options_response() return options_resp.headers['allow'] def decorator(f): def wrapped_function(*args, **kwargs): if automatic_options and request.method == 'OPTIONS': resp = current_app.make_default_options_response() else: resp = make_response(f(*args, **kwargs)) if not attach_to_all and request.method != 'OPTIONS': return resp h = resp.headers h['Access-Control-Allow-Origin'] = origin h['Access-Control-Allow-Methods'] = get_methods() h['Access-Control-Max-Age'] = str(max_age) if headers is not None: h['Access-Control-Allow-Headers'] = headers return resp f.provide_automatic_options = False return update_wrapper(wrapped_function, f) return decorator template = """